Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4729 96.9 3e-15 seq686 91.5 1e-13 >seq4729 Length=178566 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 127162 GGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATG 127221 || || || || |||||| | |||| || ||||| ||||| ||||| | |||||| ||| Sbjct 55100 GGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGATG 55041 Query 127222 CCACAGGCAGAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAG 127281 || |||||||| || || || || || || || || || | || |||||||| || ||| Sbjct 55040 CCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAGAGAAG 54981 Query 127282 CTGAAGAC 127289 |||||||| Sbjct 54980 CTGAAGAC 54973 >seq686 Length=494244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || ||||| || || || |||| || ||||| || | ||||| | | || ||||| Sbjct 395294 CCAGTGGAGCCAAAACCTCCTGAGCTCCTTTCAGTGTTATCCAGTGATTCAACTTCTTCT 395353 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 | || || | | || || ||||| ||||| || || || || || | ||||| Sbjct 395354 AAGTCTGGATAAAAAATTCGTTCACAGATGAGCTGTGCAATCCGATCACCTTTTTTTACT 395413 Query 5624 TCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCG 5683 || || | | | || ||||| |||||||| || || || || || | || || | Sbjct 395414 TCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCTTTG 395473 Query 5684 TCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCC 5743 ||||| || || || || || || ||||||||||| || |||| ||| || | |||| Sbjct 395474 TCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCATAGAGCT 395533 Query 5744 ACGCGGCCGTAGCACCCA 5761 || | |||||||||||| Sbjct 395534 ACTCTTCCGTAGCACCCA 395551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429748188231176