Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq5571 141 1e-28 seq3050 127 3e-24 >seq5571 Length=148922 Score = 141 bits (156), Expect = 1e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| || || |||| || ||| || ||||| || ||||| || ||||| |||| Sbjct 102945 TGGTCTGGAAGAGCCGTTCATCGTCCCACTCAGGATGCTCCCGTTTAAGCACATCACACA 102886 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 |||||||||| |||| |||||||| || || |||||||| |||||||||||||| |||| Sbjct 102885 CTCTGTTGTGCTCCCGCAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAA 102826 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | |||| || || || || | || | || || || | | || || |||||||| | Sbjct 102825 AGACCTCCTGCCCCACTGCAAACCGTAGATGCTCAGGGATGTGAGGGGGGTAGATCATCT 102766 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| |||||||| | ||| ||||||| || || |||| Sbjct 102765 CTACCTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCACCAAT 102720 Score = 129 bits (142), Expect = 8e-25 Identities = 200/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || |||||| |||||||| || | ||| | |||| ||| Sbjct 104476 AAGGGACAGCCCTTCACATTATTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 104417 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| || || ||||| || |||||||| || || |||||| Sbjct 104416 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 104357 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 104356 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 104297 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| ||||||||||| | | | | || | ||||| || || ||| Sbjct 104296 ATAGCATCTGGACGTGGCTTTTCCACAAGCAGGGCAGGATAGAGCTCCATGGCATCAATG 104237 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || || || |||||||| ||||||| Sbjct 104236 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 104191 Score = 116 bits (128), Expect = 5e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 101598 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 101539 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| ||||||| |||||||| | || | ||| || ||||| Sbjct 101538 AAACTGATGCGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTCGAGCCTTGAGGATC 101479 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | |||| |||||| ||| |||| ||| Sbjct 101478 AGGAATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 101440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 10288 CACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 10347 ||||||| || || | ||||| || || |||| | || ||||| || || | || Sbjct 100855 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 100796 Query 10348 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGG 10407 | |||||||| |||||||| ||||||||| || ||| | |||| | ||||||| | | Sbjct 100795 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 100736 Query 10408 GAGGGCTGTCAATCAAATCGGATCT 10432 | || ||||||||||||| ||||| Sbjct 100735 GCGGACTGTCAATCAAATGTGATCT 100711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 200/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| |||||||| || ||| | ||||| || || || | ||||| | ||||| Sbjct 103427 CTTACCCGGCCAGCGATCTGTCTGGTGAATGACTCAACAAAGTGGGTGAGTCCGTGCTCG 103368 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTT-TGTTTTATCAATCTC 9440 ||||| ||||| |||||||| | ||| | |||||| |||| || | | || |||| Sbjct 103367 ATGAGGATGGAGTTGTTGTACAGGAACTGCTTGTAGTTGTACTCCTGGTCT-TCGATCTG 103309 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 || || |||| || | ||||||||||| | |||| || |||| || || Sbjct 103308 GAAGCTGTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCGGCTGCGATGCG 103249 Query 9501 ATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || || ||||||||| || ||||| || || | ||| | | ||||| Sbjct 103248 GTTCTGATACTGGAACTGCTGGTTGAACAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTG 103189 Query 9561 GTAGCCGCTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCC 9614 |||||| || || ||||| ||||| || || |||| ||| ||||| || ||||| Sbjct 103188 GTAGCCACTCAGGTGCTGCACATAGTCTTCGATCAC---AATCTTGATAGTCTCCCC 103135 >seq3050 Length=242780 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | || || || ||| ||| Sbjct 71589 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTC 71648 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | |||||||| || |||||| Sbjct 71649 CCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGATG 71708 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | || || | ||| ||||| | || |||||||| Sbjct 71709 GAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAGGGCATCGATGTCA 71768 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || ||||| ||||||| Sbjct 71769 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTG 71811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708007373195120