Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3071 116 3e-21 seq3025 113 4e-20 seq1738 111 1e-19 seq22505 100 3e-16 seq5999 100 3e-16 seq17328 82.4 7e-11 >seq3071 Length=285302 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | | || |||||||| | ||| || || || ||| | | Sbjct 253165 TCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCC 253224 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | | |||||||| |||||||| ||||| || Sbjct 253225 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTCCTT 253284 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || |||||||| | | |||||| | | | || || |||| |||||| Sbjct 253285 ATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGTGAT 253344 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 |||||| || ||||| || |||| || |||||||| || Sbjct 253345 GGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCATCCT 253383 >seq3025 Length=599017 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||||| || || || || || | ||| || ||| || ||| | | Sbjct 117921 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 117980 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | || ||||| || || || || ||||| ||| Sbjct 117981 TCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 118040 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| ||||| | | ||||| || | |||||| Sbjct 118041 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 118100 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | |||||||| ||||||||||| Sbjct 118101 GTCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 118135 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||||| || || || || || | ||| || ||| || ||| | | Sbjct 115663 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 115722 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | || ||||| || || || || ||||| ||| Sbjct 115723 TCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 115782 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| ||||| | | ||||| || | |||||| Sbjct 115783 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 115842 Query 94973 GTTTT 94977 || || Sbjct 115843 GTCTT 115847 >seq1738 Length=291085 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||||||| || || ||||| | || || || || || | |||||| Sbjct 20107 CACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCCTC 20048 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||| || | || ||||| || || || || ||||| ||||| | Sbjct 20047 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 19988 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| ||| |||||| | | ||||| |||| |||||||| || Sbjct 19987 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 19928 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | || || |||||||||||||||||| Sbjct 19927 GCCCATCAGGGTCTTCACAAAGATCTGCATG 19897 >seq22505 Length=6242 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | ||||| ||||||||| || || || || | ||| |||||| | Sbjct 3181 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3240 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||||||||| || ||| |||| || | || || || || || || Sbjct 3241 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 3300 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||||| || || ||| | | | ||| Sbjct 3301 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 3360 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| |||||||| || || | || || |||||||| ||||||||| Sbjct 3361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATG 3408 >seq5999 Length=119422 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || || | ||||| ||||||||| || || || || | ||| |||||| | Sbjct 3062 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3003 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||||||||| || ||| |||| || | || || || || || || Sbjct 3002 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 2943 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||||| || || ||| | | | ||| Sbjct 2942 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 2883 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| |||||||| || || | || || |||||||| ||||||||| Sbjct 2882 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATG 2835 >seq17328 Length=23406 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/214 (69%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || |||| | || || || || | ||| || | | || ||| | |||||| Sbjct 1398 CACCAGGTACAAAATGGACTCTTTCTGGATGTTGTAGTAGGACAGAGTCCGGCCATCCTC 1457 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || |||| || | ||| ||||| | || | || |||| ||||| | Sbjct 1458 TAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTGAGGTAGGATGGCTTCCTTGTCTTG 1517 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT-- 94975 || || ||||||| | | | |||||| | | | ||| |||| |||||| | Sbjct 1518 GATCTTGGCCTTGATGTTCTCAATGGTGTCACTGGGCTGGACCTCAAGAGTGATGATGAT 1577 Query 94976 -TTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || |||||||||||||||||||||||| Sbjct 1578 GTTGCCTGTCAGAGTTTTCACAAAGATCTGCATG 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447963818540280