Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4938 159 5e-35 seq11700 154 2e-33 seq11024 154 2e-33 seq2940 141 1e-29 >seq4938 Length=141944 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||| || || || ||||| || ||||||||||| || ||| Sbjct 18080 GCCAAGCGCCATCGCAAGGTTCTGCGCGACAATATCCAGGGCATCACCAAGCCCGCCATC 18139 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || ||||| ||||| || |||| || | |||| || |||| Sbjct 18140 CGCCGGCTGGCCCGACGCGGTGGTGTCAAACGCATCTCCGGCCTCATCTACGAGGAGACC 18199 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 18200 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACAGAG 18259 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||| ||||| |||||| |||||||| | ||||| || | || || || ||| Sbjct 18260 CACGCTAAACGCAAGACCGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGGC 18319 Query 16673 CGTAAGATTTATGGTTTTGGA 16693 || | | ||||| |||||| Sbjct 18320 CGCACCCTGTATGGCTTTGGA 18340 >seq11700 Length=63708 Score = 154 bits (170), Expect = 2e-33 Identities = 193/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || |||||||||||||| || || |||||||| || | Sbjct 22255 CGCCAAGCGACACCGCAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCCA 22313 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 22314 TCCGGCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 22373 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | || | ||||| ||| || |||| || ||| || ||| |||| Sbjct 22374 CTCGCGGTGTCCTCAAAGTGTTCCTGGAGAATGTGATCCGGGACGCTGTCACCTACACCG 22433 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || | |||||| | |||||||| | || || || | Sbjct 22434 AGCACGCCAAGCGCAAGACGGTTACGGCTATGGATGTGGTCTATGCGCTCAAGCGCCAGG 22493 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| ||||||| || || Sbjct 22494 GCCGTACTCTTTATGGCTTCGG 22515 >seq11024 Length=33029 Score = 154 bits (170), Expect = 2e-33 Identities = 197/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || || ||||| || ||||||||||| || | Sbjct 4895 CGCCAAGCGTCACCGCAAGGTC-CTGCGCGACAATATCCAGGGCATCACCAAGCCCGCCA 4837 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| |||||||| ||||||||||| |||| || | |||| || |||| Sbjct 4836 TCCGCCGCCTGGCCCGTCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 4777 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 4776 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGG 4717 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || | || || || | Sbjct 4716 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 4657 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || || ||| ||||| Sbjct 4656 GCCGCACCCTCTACGGCTTCGGAGGTTAA 4628 >seq2940 Length=212193 Score = 141 bits (156), Expect = 1e-29 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || || ||||| || ||||||||||| || | Sbjct 1831 CGCCAAGCGTCACCGCAAGGTC-CTGCGCGACAATATCCAGGGCATCACCAAGCCCGCCA 1773 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| |||||||| ||||||||||| |||| || | |||| || |||| Sbjct 1772 TCCGCCGCCTGGCCCGTCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1713 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 1712 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGG 1653 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCT 16652 ||||||| || || ||||| |||||| ||||||| | |||| Sbjct 1652 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCT 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79021783442139