Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4138 165 1e-35 seq137 120 4e-22 seq9705 116 5e-21 seq3167 102 1e-16 >seq4138 Length=267950 Score = 165 bits (182), Expect = 1e-35 Identities = 339/501 (68%), Gaps = 6/501 (1%) Strand=Plus/Plus Query 32964 GTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGGTA 33020 |||| |||| || | ||| ||| ||| || | ||||| || |||| | || || Sbjct 162532 GTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCTCCATCCTCTGATA 162591 Query 33021 TTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAA 33080 || ||||| || || || || || || || || ||||| ||||| ||||||||||||| Sbjct 162592 CTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATGAG 162651 Query 33081 ATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATC 33140 ||||||||||| || || |||| || | || || | || || | || || Sbjct 162652 GTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTGTC 162711 Query 33141 CGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGG 33200 || |||||||| || || ||||||| || ||||| || || || || || || Sbjct 162712 CGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACAGG 162771 Query 33201 AAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAAC 33260 || ||| | || ||||| || || || | || ||| ||| || || | || Sbjct 162772 CAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCA-CTG--ATGATTTCTTGTAC 162828 Query 33261 GGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTG 33320 || || ||| || | | || | ||||||| || || || | ||| | Sbjct 162829 TCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGACACAGGG 162888 Query 33321 CAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACG 33380 | |||||| ||||| ||||| || ||||||||||| || || || ||||| || || || Sbjct 162889 TAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCG 162948 Query 33381 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGC 33440 || || ||||| ||||| || || || || ||||| |||||||| |||||||| ||||| Sbjct 162949 TTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGC 163008 Query 33441 AAAGGCAATAAGTCTCTCTCC 33461 |||||| | || || ||||| Sbjct 163009 AAAGGCCACAACTCGTTCTCC 163029 >seq137 Length=869495 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| || ||||||||||| || || || ||||| || || || || | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||| |||||||| |||||||| |||||||||| Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/135 (74%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 32962 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTTTTTG 33017 |||||| |||| || | ||| ||| ||| |||| ||||| || ||||| | || Sbjct 364688 AAGTCAGCATCCAAGGTGAAAGAATTCTCTG-TTGAATTTGACATCACCCCCATCCTCTG 364746 Query 33018 GTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCAT 33077 || || ||||| || || || || || || || || ||||| | ||| ||||||||||| Sbjct 364747 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCAT 364806 Query 33078 GAAATCAAACGGATT 33092 ||| ||||||||||| Sbjct 364807 GAAGTCAAACGGATT 364821 >seq9705 Length=66704 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 25042 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 24983 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 24982 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 24923 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 24922 CTGTTTCTTATACCATA 24906 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 18669 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCG 18610 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 18609 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 18550 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 18549 AGGCTCCAGGTAAATAGC 18532 >seq3167 Length=233518 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || |||||||| || || |||||||||||||| ||||| | ||| || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| || || | ||| ||||| ||||| ||||| | ||||| || ||||||||||| Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 45083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622492269446680