Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9705 100 7e-16 seq4138 86.0 2e-11 >seq9705 Length=66704 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 20287 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCACAGACAGAGACAGGTACCCCGTACATG 20346 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 20347 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGC 20406 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || || ||| Sbjct 20407 AGCAACCTGTGTACAGAAATAGTAGAGTATACC 20439 >seq4138 Length=267950 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||| || | || ||||||| || ||||| || ||||| ||||| | ||| || Sbjct 163026 GAACGAGTTGTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCA 162967 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| || ||| | ||| Sbjct 162966 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATT 162907 Query 22609 AGCCGAGATGAGGGT 22623 ||| ||||||||||| Sbjct 162906 AGCAGAGATGAGGGT 162892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302377981586786