Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3025 131 2e-25 seq22505 95.1 1e-14 seq5999 95.1 1e-14 seq2959 89.7 5e-13 seq1738 89.7 5e-13 >seq3025 Length=599017 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | || | ||| ||||| || || |||||||| ||| || |||||| Sbjct 117921 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 117980 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||||||||| |||| | | ||||||||| || ||||| ||||| ||| Sbjct 117981 TCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 118040 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || ||| ||| ||||| || | ||| | | Sbjct 118041 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 118100 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| |||| ||||| ||||| |||||||| Sbjct 118101 GTCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 118135 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | || | ||| ||||| || || |||||||| ||| || |||||| Sbjct 115663 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 115722 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||||||||| |||| | | ||||||||| || ||||| ||||| ||| Sbjct 115723 TCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 115782 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || ||| ||| ||||| || | ||| | | Sbjct 115783 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 115842 Query 131200 GTTTT 131204 || || Sbjct 115843 GTCTT 115847 >seq22505 Length=6242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| || |||| ||| ||||| | || | || ||||| || || ||||||||| Sbjct 3175 ATGATGCCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAA 3234 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || ||| || ||||| ||||||||||| || | || | | ||| ||||| Sbjct 3235 TCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCA 3294 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||| ||||| ||| || ||||| | || | ||||| ||| | Sbjct 3295 GGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGC 3354 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || || | || | ||| || || | || || || || || ||||||||| Sbjct 3355 TAGACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATG 3408 >seq5999 Length=119422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| || |||| ||| ||||| | || | || ||||| || || ||||||||| Sbjct 3068 ATGATGCCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAA 3009 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || ||| || ||||| ||||||||||| || | || | | ||| ||||| Sbjct 3008 TCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCA 2949 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||| ||||| ||| || ||||| | || | ||||| ||| | Sbjct 2948 GGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGC 2889 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | || || | || | ||| || || | || || || || || ||||||||| Sbjct 2888 TAGACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATG 2835 >seq2959 Length=310600 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | ||| || || | || | ||| ||||| || || ||||||||||| Sbjct 279615 AGCCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 279674 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||||||||| || |||| | ||||||||||| || | Sbjct 279675 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGG 279734 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || ||||| || ||| || ||| | | ||| | || || ||| ||||| Sbjct 279735 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGA 279794 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || ||||| || ||||| Sbjct 279795 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCAT 279843 >seq1738 Length=291085 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| ||| || ||||| | || | || ||||| ||||| || ||||| Sbjct 20130 ATGATGCCACCATGCAGGCGAAGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAG 20071 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || ||| || ||||| ||||||||||| || | || | | ||||||||| Sbjct 20070 ACGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCA 20011 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||| ||||| ||| || ||||| | ||| | || || ||| | Sbjct 20010 GGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGC 19951 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || | ||| || || | || || || || || ||||||||| Sbjct 19950 TCGACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATG 19897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471668094952320