Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3025 105 5e-18 seq5338 87.8 1e-12 >seq3025 Length=599017 Score = 105 bits (116), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||||| || ||| | | || Sbjct 117923 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 117982 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || ||||| ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 117983 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 118042 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||||| |||||| |||| ||||||| Sbjct 118043 CTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 118100 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || || | ||||| || || ||||||||| Sbjct 118101 GTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 118136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||||| || ||| | | || Sbjct 115665 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 115724 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || ||||| ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 115725 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 115784 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||||| |||||| |||| ||||||| Sbjct 115785 CTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 115842 Query 16901 GTTTT 16905 || || Sbjct 115843 GTCTT 115847 >seq5338 Length=92157 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||||| |||||||| || || |||||||| || | | || | | || ||| Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 | || ||||| ||| | || || ||||| ||||| || | ||||||||| || || Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || |||||| | | | ||||| | ||| || |||| ||||||||||| Sbjct 52281 ATCTTGGC--CTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTT 52338 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCTTATTAATGA 16954 | | |||||| || || | || || |||||||||| | | ||||||| Sbjct 52339 TGCTGGTCAGGGTCTTCATGAAGATTTGCATTTTGT---CCTGTTAATGA 52385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404799565064770