Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4138 149 8e-31 seq686 123 3e-23 seq9705 116 5e-21 seq137 111 2e-19 seq3167 98.7 1e-15 >seq4138 Length=267950 Score = 149 bits (164), Expect = 8e-31 Identities = 315/466 (68%), Gaps = 7/466 (2%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| || |||| | || || || ||||| || || || || || || || || ||| Sbjct 162569 GACATCACCTCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCT 162628 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 |||||||| ||||||||||||| || || ||||| || || |||| || | || Sbjct 162629 TCTAATGAAATATTTTCCATGAGGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAAC 162688 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 || | || || | || || | || ||||| || || ||||||| || Sbjct 162689 CCTAGCTCCAGCATAAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAG 162748 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || || || || || ||| | || ||||| || || || | || Sbjct 162749 TTCATCCCGATGAGATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACT 162808 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 32652 || ||| || || | |||| || || ||| || ||| | || | | Sbjct 162809 GCA-CTG--ATGATTTCTTGTACTCTTGGCTCCGACGGCTTGTGTACCAGG--TGCCTGA 162863 Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||||| || || || | ||| ||| |||||| ||||| ||||| | |||||||||| Sbjct 162864 ACATCAGGCAGGCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 162923 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | || || || ||||| || || || || || ||||| ||||| || ||||| || |||| Sbjct 162924 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAG 162983 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 | ||||| || |||||||| || |||||||| | || || ||||| Sbjct 162984 AGAAGAAGATCCCTTCTACAGCAGCAAAGGCCACAACTCGTTCTCC 163029 >seq686 Length=494244 Score = 123 bits (136), Expect = 3e-23 Identities = 245/358 (68%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461 ||| || || ||||| ||| ||| ||||| | ||| |||| || ||| |||||| Sbjct 395293 TCCAGTGGAGCCAAAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGATTCAACTTCT 395350 Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521 | | ||||||||| | || |||| | |||| ||||| || || | ||| || | ||| Sbjct 395351 TCTAAGTCTGGATAAAAAATTCGTTCACAGATGAGCTGTGCAATCCGATCACCTTTTTTT 395410 Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581 || | || | ||||||| |||| || | || || | |||||| ||||||||| Sbjct 395411 ACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCT 395470 Query 30582 TCGTCTATTACACCGCCTCCTATATCAATGCCTT---TTAGGGACAGACCAGACCTAGGA 30638 | |||||| |||||| |||||| ||| ||| | ||| | || ||||||| || Sbjct 395471 TTGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCATAGA 395530 Query 30639 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGT 30698 |||| ||| || ||||| ||| || | || ||| ||||| || | | || Sbjct 395531 GCTACTCTTCCGTAGCACCCAGAAGGAATAGCGATCTGAATGTCTGTTTTCACAA--TGG 395588 Query 30699 CTTTCTCCT--GGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCAGC 30754 |||||||| || || || ||||||||||| || | ||| | ||||| || ||||| Sbjct 395589 CTTTCTCCATGGGTGGTATTGTATAATCATAGGCACCATACAGGTCATAGCCTGCAGC 395646 >seq9705 Length=66704 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 25042 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 24983 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 24982 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 24923 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 24922 CTGTTTCTTATACCATA 24906 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||| ||| |||| | || || ||||| || | || ||||| || ||||||||| Sbjct 13139 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 13080 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || |||||||| || ||||| || ||||| || | ||| ||||| || ||||| Sbjct 13079 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATGGCAGCGTCAATATCTTCTTTGTGAATC 13020 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| ||||| ||||||||| Sbjct 13019 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 12981 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 8322 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCTAAGA 8263 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | |||||| | || || ||| | || || |||||||| |||| Sbjct 8262 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 8203 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 8202 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCAT 8157 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || |||||||||||||| || || || || || ||||| || | || |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 18669 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCG 18610 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 18609 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 18550 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 18549 AGGCTCCAGGTAAATAGC 18532 >seq137 Length=869495 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||||||| Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 32803 CAATAAGTCTCTCTCC 32818 | | || || ||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 366884 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366939 >seq3167 Length=233518 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 45201 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 45142 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 45141 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 45083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633169266470800