Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq248 120 3e-22 seq1738 98.7 9e-16 seq22505 95.1 1e-14 seq5999 95.1 1e-14 >seq248 Length=567972 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | ||||| || ||||||| | || |||||| | Sbjct 1683 AATGCAAATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1624 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| |||||||| || |||||||| ||| Sbjct 1623 TGACACCATCGAGAATGTGAAGGTGAAGATCCTGGACAAAGAGGGCATTCCACCCCCCCA 1564 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | || ||||| ||||| || | ||||||||| ||||| | ||||||||| Sbjct 1563 TCAGCAACTCATCTTTGCTGGCAAGCAGCTGGAAGATGATTGCACTCTCTCCGATTACAA 1504 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||| | ||||| ||||| || || | || || | || ||||| || |||| Sbjct 1503 TATCTAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGCTATTA 1450 >seq1738 Length=291085 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||| || || ||||||| | || || ||| | | Sbjct 19898 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 19957 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 19958 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 20017 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | || |||| || || || || |||||| Sbjct 20018 CAGAGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGTCTACAAT 20077 Query 25179 ATTCAAAAAGAATCCAC 25195 || |||||||| ||||| Sbjct 20078 ATCCAAAAAGAGTCCAC 20094 >seq22505 Length=6242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||| || || ||||||| | || || || | | Sbjct 3407 ATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCCAGT 3348 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||| || | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 3347 GATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAT 3288 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| || || || ||||||||| Sbjct 3287 CAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTACAAC 3228 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| ||||| Sbjct 3227 ATCCAGAAAGAGTCCAC 3211 >seq5999 Length=119422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||| || || ||||||| | || || || | | Sbjct 2836 ATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCCAGT 2895 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||| || | ||| || ||| ||||| ||||| || ||||||||||| Sbjct 2896 GATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAT 2955 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| || || || ||||||||| Sbjct 2956 CAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTACAAC 3015 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| ||||| Sbjct 3016 ATCCAGAAAGAGTCCAC 3032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433019457328745