Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq22505 118 9e-22 seq5999 118 9e-22 seq1738 109 5e-19 seq248 98.7 8e-16 seq8984 96.9 3e-15 seq2959 93.3 4e-14 seq17328 87.8 2e-12 seq5338 84.2 2e-11 >seq22505 Length=6242 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | | || || || |||||||||| || | || Sbjct 3410 AACATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCC 3351 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | | || |||| || || ||||||||||| || || ||||| || Sbjct 3350 AGTGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 3291 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||||||||| ||| | |||||| ||| ||| | ||||||||| Sbjct 3290 CATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTAC 3231 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || ||||| ||||| Sbjct 3230 AACATCCAGAAAGAGTCCAC 3211 >seq5999 Length=119422 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | | || || || |||||||||| || | || Sbjct 2833 AACATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCC 2892 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | | || |||| || || ||||||||||| || || ||||| || Sbjct 2893 AGTGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 2952 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||||||||| ||| | |||||| ||| ||| | ||||||||| Sbjct 2953 CATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTAC 3012 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || ||||| ||||| Sbjct 3013 AACATCCAGAAAGAGTCCAC 3032 >seq1738 Length=291085 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | | || || || |||||||||| || || || Sbjct 19895 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCC 19954 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || ||||| || Sbjct 19955 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 20014 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||| ||||| ||| | |||||| ||| ||| | |||| ||| Sbjct 20015 CAGCAGAGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGTCTAC 20074 Query 22396 AACATTCAAAAAGAATCCAC 22415 || || |||||||| ||||| Sbjct 20075 AATATCCAAAAAGAGTCCAC 20094 >seq248 Length=567972 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || ||||||| || || |||| || || ||||| Sbjct 1688 GTCAAAATGCAAATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAG 1629 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || | ||||| ||||| ||||||||| Sbjct 1628 CCCAGTGACACCATCGAGAATGTGAAGGTGAAGATCCTGGACAAAGAGGGCATTCCACCC 1569 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || | || || ||||| ||||| ||| | || ||| | |||| |||||||| Sbjct 1568 CCCCATCAGCAACTCATCTTTGCTGGCAAGCAGCTGGAAGATGATTGCACTCTCTCCGAT 1509 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 ||||| || | ||||| |||||| Sbjct 1508 TACAATATCTAGAAAGAGTCCACC 1485 >seq8984 Length=72256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || ||||| || || || | || |||||||||||||| Sbjct 54481 AAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGAGGCTGATATTTGCCGGCAAG 54540 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| | ||||| |||||||| || ||||| ||||| Sbjct 54541 CAGCTGGAGGATGGCCGGACCCTGTCCGACTACAACATCCAGAAAGAGTCCAC 54593 >seq2959 Length=310600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || || || || || || |||| || || || || Sbjct 279849 GTCAAAATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTCGAG 279790 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || || ||||| || || ||| Sbjct 279789 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCC 279730 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 279729 GACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 279670 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| |||||| Sbjct 279669 TACAACATCCAGAAAGAGTCCACC 279646 >seq17328 Length=23406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA---CTCTTGAAGTGGAA 22272 || ||||| || ||||| |||||| | || || || | ||| ||||||| || | Sbjct 1613 AACATGCAGATCTTTGTGAAAACTCTGACAGGCAACATCATCATCACTCTTGAGGTCCAG 1554 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | ||||| || || ||||||||||| | || | ||| Sbjct 1553 CCCAGTGACACCATTGAGAACATCAAGGCCAAGATCCAAGACAAGGAAGCCATCCTACCT 1494 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 | || || | || |||||||| ||||| ||| |||||||| ||| || | ||| | Sbjct 1493 CACCAGCAGAGACTGATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACTCTGTCCTAC 1434 Query 22393 TACAACATTCAAAAAGAATCCA 22414 |||||||| || ||||| |||| Sbjct 1433 TACAACATCCAGAAAGAGTCCA 1412 >seq5338 Length=92157 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || | || || | ||| | ||||| |||| || || |||| | Sbjct 52372 AAAATGCAAATCTTCATGAAGACCCTGACCAGCAAAACCATCACCCTGGAGGTGGCGCCG 52313 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | | || || || || || || ||||| || || ||||| Sbjct 52312 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGAC 52253 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | || ||| |||||| | || |||||| Sbjct 52252 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 52193 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 52192 AACATCCAGAAAGAGTCCACC 52172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419429140940995