Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3025 178 2e-39 seq22505 170 4e-37 seq5999 170 4e-37 seq2959 168 1e-36 seq1738 168 1e-36 seq5338 159 6e-34 seq248 150 3e-31 seq3071 147 4e-30 seq14192 127 4e-24 seq17328 123 5e-23 seq8984 118 2e-21 seq5954 116 7e-21 seq3301 89.7 9e-13 seq5492 84.2 4e-11 >seq3025 Length=599017 Score = 178 bits (196), Expect = 2e-39 Identities = 173/220 (79%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || ||||| || || | Sbjct 117918 AGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 117977 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || || || || || ||||| || || ||||||||| Sbjct 117978 CCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 118037 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| |||||||||||| ||| | || || |||| ||| Sbjct 118038 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCGACCTCCAGGGT 118096 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || || || | ||| || ||||| ||||||||| Sbjct 118097 GATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 118136 Score = 154 bits (170), Expect = 3e-32 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || ||||| || || | Sbjct 115660 AGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 115719 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || || || || || || ||||| || || ||||||||| Sbjct 115720 CCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 115779 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| |||||||||||| ||| | || || |||| ||| Sbjct 115780 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCGACCTCCAGGGT 115838 Query 68423 GATGGTTTT 68431 |||||| || Sbjct 115839 GATGGTCTT 115847 >seq22505 Length=6242 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| | ||||||||||| |||||||| |||||||| Sbjct 3181 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3240 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || | |||||| ||||| ||||| || || || ||||| ||||| Sbjct 3241 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 3300 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||| || |||||| || | | || Sbjct 3301 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 3360 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||||| || ||||||||||| Sbjct 3361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 3407 >seq5999 Length=119422 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| | ||||||||||| |||||||| |||||||| Sbjct 3062 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3003 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || | |||||| ||||| ||||| || || || ||||| ||||| Sbjct 3002 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 2943 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||| || |||||| || | | || Sbjct 2942 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 2883 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||||| || ||||||||||| Sbjct 2882 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 2836 >seq2959 Length=310600 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| ||||| || || || | |||||||| Sbjct 279635 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 279694 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||||| || |||||||| || ||||| || || || || Sbjct 279695 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 279754 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 279755 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 279814 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| | |||||| ||||| || |||||| || Sbjct 279815 CCCGTCAAGGTCTTCACGAAGATTTGCATTTTG 279847 >seq1738 Length=291085 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| | ||||||||||||||||| || || |||| || |||| Sbjct 20115 AGGCGAAGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGG 20056 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || || ||||| || || || ||||| ||||| ||||||||| Sbjct 20055 CCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCC 19996 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| |||||||||||| | || || || | ||| Sbjct 19995 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTG 19936 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||| | |||||||| || || |||||||| Sbjct 19935 ATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 19898 >seq5338 Length=92157 Score = 159 bits (176), Expect = 6e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| ||||| || || || | |||||||| Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||||| || |||||||| || ||||| || || || || Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | | || |||| |||||||||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || |||||||| | ||| || |||||| || Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTTG 52373 >seq248 Length=567972 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| | ||| || ||||||||||| || | ||||||| Sbjct 1474 ACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAGAGAGTGCAATCATCTTCC 1533 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || |||||| || ||| |||||||||||| || ||||| | Sbjct 1534 AGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTGGAATGCCCTCTTTGTCCAGG 1593 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||| || |||||||||||| | || || |||| ||||||||| || Sbjct 1594 ATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 1653 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| || |||||| || Sbjct 1654 CCGGTTAGGGTCTTCACGAAGATTTGCATTTTG 1686 >seq3071 Length=285302 Score = 147 bits (162), Expect = 4e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 || ||||| | ||| |||| || || ||||||| ||||||||||| || || || | Sbjct 253157 CCACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAA 253216 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || |||||||| | |||||| || || || || || | || || || || ||||| Sbjct 253217 GTATGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATT 253276 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || || ||||| |||||||| || || ||||||| | |||||| || Sbjct 253277 CCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCA 253336 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||| ||||| |||||||| | ||| |||||||| Sbjct 253337 AGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 253380 >seq14192 Length=18816 Score = 127 bits (140), Expect = 4e-24 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| ||||| || || || || || || | ||||||| Sbjct 10472 ACCAGGTGCAAGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCC 10531 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC--GGGTGGAATGCCTTCCTTGTCTT 68370 |||||||| || || || || || || ||||| ||| |||||||| | ||||| | Sbjct 10532 AACTGCTTGCCAGCAAAGATTTC-CTCTGCTGGTCAGGGGGGGAATGCCCTTTTTGTCAT 10590 Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 |||||||||||||||| ||| ||| ||||| | ||| || |||| ||| ||||| | Sbjct 10591 GAATCTTTGCCTTGACCTTCTCAATGATGTCTCTGGGTTCAACCTCCAGGGTAATGGTCT 10650 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || ||||||| | || |||||||| Sbjct 10651 TGCCTGTCAGGGTCTGCATAAAGATCTGCAT 10681 >seq17328 Length=23406 Score = 123 bits (136), Expect = 5e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68266 TGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGG 68325 |||||||||| |||||||| || | ||| || |||| ||||| |||| |||||| || | Sbjct 1412 TGGACTCTTTCTGGATGTTGTAGTAGGACAGAGTCCGGCCATCCTCTAGCTGCTTGCCAG 1471 Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385 | ||||| ||||| || |||| ||| | ||| ||||||||||||| ||||| ||||||| Sbjct 1472 CAAATATCAGTCTCTGCTGGTGAGGTAGGATGGCTTCCTTGTCTTGGATCTTGGCCTTGA 1531 Query 68386 CGGCCTCGATGGTGTC 68401 | ||| |||||||| Sbjct 1532 TGTTCTCAATGGTGTC 1547 >seq8984 Length=72256 Score = 118 bits (130), Expect = 2e-21 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| |||||||| || ||||| || |||| ||||| || | |||||| ||| Sbjct 54593 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCG 54534 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || ||||| || || || ||||| ||||| ||||||||||||||||| ||||| Sbjct 54533 GCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTT 54481 >seq5954 Length=158713 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| |||| | || |||||||| | ||||||||| || || | Sbjct 21678 CCACCACGAAGTCTCAACACCAGATAAAGGGTGGACTCCTCTTGGATGTTGTAGTCAGGC 21619 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || | ||| || || || || | || || | | Sbjct 21618 AAAGTACAGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCAGATCAGGAGAA 21559 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||| |||| || || ||||| |||||||| || || |||||| | || || Sbjct 21558 ATTCCTCCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTAAGGGCTCAACC 21499 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || | |||||||| ||||| |||||||| Sbjct 21498 TCGAGCGTGATGGTTTTCCCTGGAAGGGTCTTCACGAAAATCTGCAT 21452 >seq3301 Length=254354 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 252452 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 252393 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| || || |||||||| Sbjct 252392 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 252349 >seq5492 Length=135326 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 |||||||||| |||||||||||| ||||| || ||||||| || |||||||||||| Sbjct 41774 GAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 41833 Query 84512 GAGCCCCACATCGGGC 84527 ||||||||| | |||| Sbjct 41834 GAGCCCCACGTTGGGC 41849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920949350681560