Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4138 123 5e-23 seq3167 105 1e-17 >seq4138 Length=267950 Score = 123 bits (136), Expect = 5e-23 Identities = 293/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | || || || || ||||||||||| ||| | || || || || |||||| Sbjct 163017 GTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGG 162958 Query 42768 CTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | | || | | |||||| || || || || || ||||| || || ||||| || Sbjct 162957 CTCAAGAA-ACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGA 162899 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||||| | | | | |||||||||||| ||||| || ||||| |||||||| Sbjct 162898 TGAGGGTTTACCCTGTGTCTTTGCCTGCCTGATGTTC---AGGCACCTGGTACACAAGCC 162842 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 ||| || | || | | ||||||| || ||| | | ||| ||||||| || Sbjct 162841 GTCGGAGCCAAGAGTACAAGAAATCATCA---GTGCAGTGAGGCTAGAGCAGGAGTTTCT 162785 Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 |||| || | ||||| ||| || |||| |||||| | ||| ||| ||||||| Sbjct 162784 CACGGAGGCCCTGCCTGTGAATCTCATCGGGATGAACTGCACCCTGATGAAGCAGTACAT 162725 Query 43007 CCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC 43066 | | | ||| | ||| || || || | || ||||| | | ||| Sbjct 162724 CGAATTCGTGCCGGACAGGCTTATGCTGGAGCTAGGGTTCAGCAAGATTTTCAAAGTAGA 162665 Query 43067 GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 || || ||| | ||||| || || || || || || ||||| ||||| || ||||| Sbjct 162664 AAATCCGTTTGACCTCATGGAAAATATTTCATTAGAAGGGAAGACAAACTTCTTTGAGAA 162605 Query 43127 GCGCGTCGCCGACTACCAG 43145 ||| || | ||| || ||| Sbjct 162604 GCGAGTGGGCGAGTATCAG 162586 >seq3167 Length=233518 Score = 105 bits (116), Expect = 1e-17 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | ||||| || ||| | |||||||| || | || || | ||||||| Sbjct 45078 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 45137 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || |||||||||||||| ||||| |||||||| ||||||||| Sbjct 45138 GGCTGAAGAAGAGAGGCCTC-ATGCCCGGACTCACTTTCTCAAACGAACTGATCAGCAGG 45196 Query 42825 GACGA 42829 || || Sbjct 45197 GATGA 45201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943649560886480