Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq19747 113 4e-20 seq24782 95.1 1e-14 >seq19747 Length=23491 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||||||||||||||||||| || || || |||| ||| Sbjct 2795 TGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 2736 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || ||||| |||||||| || ||||| || || ||||| || | ||||||||| |||||| Sbjct 2735 ATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTAGCTACATAGAATTGA 2676 Query 20369 CA 20370 || Sbjct 2675 CA 2674 >seq24782 Length=13686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| ||||||||||||||| || || || |||| || Sbjct 3243 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCA 3184 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || ||||| |||||||| || ||||| || || ||||| || | ||||||| |||||| Sbjct 3183 ATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCACTACATAGAATTGA 3124 Query 20369 CATA--ACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | ||| | || || || || ||||||| Sbjct 3123 CAGAGGGCAA--GGCAAGGAGGCAGTGCCATCA 3093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441050470961320