Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3071 118 2e-21 seq2959 111 4e-19 seq5338 105 2e-17 seq5954 104 6e-17 seq1738 98.7 2e-15 seq650 95.1 3e-14 seq22505 86.0 1e-11 seq5999 86.0 1e-11 >seq3071 Length=285302 Score = 118 bits (130), Expect = 2e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308 ||| || ||||| | || ||||||| || || |||||||| || ||||| | | Sbjct 253156 ACCACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAA 253215 Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368 || | || ||||| | || || || || |||||||| ||| ||| | || || Sbjct 253216 AGTATGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAAT 253275 Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 |||||| ||||||||||| || || || || |||||||||| || | |||||| || Sbjct 253276 TCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTC 253335 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||| || || ||||| | ||| |||||||| Sbjct 253336 AAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 253380 >seq2959 Length=310600 Score = 111 bits (122), Expect = 4e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || || || | Sbjct 279617 CCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 279676 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || ||||| || ||| Sbjct 279677 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 279736 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || |||||||||||||| || || |||||||| || || | || || | || || Sbjct 279737 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACC 279796 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| || |||| ||||| ||||| || |||||| || Sbjct 279797 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTTG 279847 >seq5338 Length=92157 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 52179 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 52238 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| || |||||||||||||| || || |||||||| Sbjct 52239 ATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTC 52298 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| | || || || ||||| || || | |||||| ||||| | | Sbjct 52299 TCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTGCTGGTCAGGGTCTTCATG 52358 Query 288463 AATATCTGCATTATGT 288478 || || |||||| ||| Sbjct 52359 AAGATTTGCATTTTGT 52374 >seq5954 Length=158713 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || |||| || ||| || | |||||| || ||||| | Sbjct 21678 CCACCACGAAGTCTCAACACCAGATAAAGGGTGGACTCCTCTTGGATGTTGTAGTCAGGC 21619 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||| | || || || | ||||||||| | ||| || | | Sbjct 21618 AAAGTACAGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCAGATCAGGAGAA 21559 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||| | ||||||||||| || || || || |||||||||| || | || || Sbjct 21558 ATTCCTCCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTAAGGGCTCAACC 21499 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 21498 TCGAGCGTGATGGTTTTCCCTGGAAGGGTCTTCACGAAAATCTGCAT 21452 >seq1738 Length=291085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || || || | ||| |||||||||||||| ||| ||| Sbjct 20124 CCACCATGCAGGCGAAGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGAC 20065 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || ||||| | ||| || | |||| Sbjct 20064 AGGGTCCGGCCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGG 20005 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || || || || | || || | || || Sbjct 20004 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 19945 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 19944 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 19898 >seq650 Length=610773 Score = 95.1 bits (104), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || |||||||| | ||||| | Sbjct 359071 CCACCATGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGCTGTAGTCAGAC 359130 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||||||| | ||| ||| | || Sbjct 359131 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 359190 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT-------CTATAGAATCGCTCGA 288419 |||||||| ||||||||||| || || || || |||| | ||| || | Sbjct 359191 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTTTCTGTCATTTAGTGTCCGAGGG 359250 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || | |||| |||| || ||||| || || ||||| ||||| |||||||| Sbjct 359251 TTCAACCTTGAGCATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 359304 >seq22505 Length=6242 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || || | ||| ||||| ||||| || || |||| Sbjct 3181 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3240 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || ||||| | ||| || | |||| Sbjct 3241 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 3300 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || | || | || | ||| || | | || Sbjct 3301 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 3360 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| ||||| || ||||||||||| Sbjct 3361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 3407 >seq5999 Length=119422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || || | ||| ||||| ||||| || || |||| Sbjct 3062 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3003 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || ||||| | ||| || | |||| Sbjct 3002 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 2943 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || | || | || | ||| || | | || Sbjct 2942 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 2883 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| ||||| || ||||||||||| Sbjct 2882 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 2836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178771375965794