Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq248 129 6e-25 seq2959 123 3e-23 seq5338 122 9e-23 seq5675 93.3 5e-14 seq3025 93.3 5e-14 seq6255 91.5 2e-13 seq2940 91.5 2e-13 seq861 89.7 6e-13 seq3120 84.2 2e-11 seq412 82.4 8e-11 >seq248 Length=567972 Score = 129 bits (142), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||| || | || ||||| | ||| | |||| |||| ||| ||| || | ||||| Sbjct 1447 AATTAATAG-CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATT 1505 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 |||||| | ||||| | || || || |||||||| ||||| || |||||| |||| || Sbjct 1506 GTAATCGGAGAGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATG 1565 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 | || ||| | || ||| ||||||| ||| || || | || | | ||||| || Sbjct 1566 GGGGGGTGGAATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACT 1625 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | ||||| || | |||||||| ||||| ||||| ||||| || |||||||||||||| Sbjct 1626 GGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATTTT 1685 Query 42212 CAC 42214 || Sbjct 1686 GAC 1688 >seq2959 Length=310600 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||| |||| ||| ||| || || || |||||||||| Sbjct 279617 CCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 279676 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| ||||| || ||||||||||||||||||| || Sbjct 279677 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 279736 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||| || ||| ||| || || | || | | ||||| || | || || Sbjct 279737 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACC 279796 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| |||||||| | ||||| || |||||||||||||| || Sbjct 279797 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTTGAC 279849 >seq5338 Length=92157 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| |||| ||| ||| || || || |||||||||| ||||| || | || || Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| || ||||||||||||||||||| || | || ||| || ||| | Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | || | | ||||| |||| |||| || | |||||||||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || || ||||| | |||||||||||||| Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTT 52372 >seq5675 Length=152738 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 46064 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 46005 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 46004 TATACTAACGAGGA 45991 >seq3025 Length=599017 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 134232 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 134291 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 134292 ATACTAACGAGGAT 134305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 131735 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 131794 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 131795 ATACTAACGAGGA 131807 >seq6255 Length=77292 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 19382 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 19323 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 19322 ATACTAACGAGGA 19310 >seq2940 Length=212193 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 159897 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 159956 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 159957 ATACTAACGAGGA 159969 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 128258 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 128199 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 128198 TACTAACGAGGA 128187 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||| | | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 154450 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 154509 Query 57067 TACTACCGAGGA 57078 ||||| | |||| Sbjct 154510 TACTAACAAGGA 154521 >seq861 Length=573511 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 354880 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 354939 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 354940 TACTAACGAGGA 354951 >seq3120 Length=319906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||| | || |||||||||||||||||| |||||||||||| Sbjct 136029 TCTCCCCGTCGGGGAATCGAACACCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACT 135970 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 135969 ATACTAACGAGGAT 135956 >seq412 Length=495752 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 97265 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 97324 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 97325 ATACTAACGAGGA 97337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542816098482320