Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5571 167 3e-36 seq3050 114 2e-20 >seq5571 Length=148922 Score = 167 bits (184), Expect = 3e-36 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| ||| ||||| |||||||||| || || || | || Sbjct 104476 AAGGGACAGCCCTTCACATTATTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 104417 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || ||||||||| || || |||||| Sbjct 104416 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 104357 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 104356 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 104297 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| ||||| || | || || | | Sbjct 104296 ATAGCATCTGGACGTGGCTTTTCCACAAGCAGGGCAGGATAGAGCTCCATGGCATCAATG 104237 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| || || || |||||||| ||| Sbjct 104236 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCT 104192 Score = 163 bits (180), Expect = 4e-35 Identities = 213/293 (73%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || |||||||| ||||| || ||||| || |||| | |||||||| |||||| Sbjct 103422 CCGGCCAGCGATCTGTCTGGTGAATGACTCAACAAAGTGGGTGAGTCCGTGCTCGATGAG 103363 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| || | ||| |||| | ||| | || | || Sbjct 103362 GATGGAGTTGTTGTACAGGAACTGCTTGTAGTTGTACTCCTGGTCTTCGATCTGGAAGCT 103303 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | ||||| || ||||| ||||| || || |||||||| Sbjct 103302 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCGGCTGCGATGCGGTTCTG 103243 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| |||||| | ||||||||| || | || | ||||||||| Sbjct 103242 ATACTGGAACTGCTGGT--TGAACAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAG 103185 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || || ||||| ||||| | | ||| | ||| || || || ||||| || Sbjct 103184 CCACTCAGGTGCTGCACATAGTCTTCGATCACAATCTTGATAGTCTCCCCTGT 103132 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 |||| || || | | | || || |||| || || || || |||| || ||||| || | Sbjct 102945 TGGTCTGGAAGAGCCGTTCATCGTCCCACTCAGGATGCTCCCGTTTAAGCACATCACACA 102886 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | |||||||| || | |||||| |||||||| |||||||| | ||| ||||| | ||||| Sbjct 102885 CTCTGTTGTGCTCCCGCAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAA 102826 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | || || | |||||||||||| || |||| || || | | || | || | ||| | Sbjct 102825 AGACCTCCTGCCCCACTGCAAACCGTAGATGCTCAGGGATGTGAGGGGGGTAGATCATCT 102766 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| || |||||||| ||||| ||||||| || || |||| |||| Sbjct 102765 CTACCTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCACCAATGACCT 102715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | ||||||||| | ||| ||| | || Sbjct 101598 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 101539 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | ||||| || ||||||| || | ||| || ||||| Sbjct 101538 AAACTGATGCGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTCGAGCCTTGAGGATC 101479 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | |||| | || ||||||||||| || | | |||| || || || Sbjct 101478 AGGAATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAACTTCTTTTGAGTCAGGAAG 101422 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10388 CACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTAT 10447 |||||||||| || | ||||| |||||||| | || ||||| || | ||| || | Sbjct 100855 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 100796 Query 10448 AATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCG 10507 | ||||| || || || || ||||||||| | ||||| ||||| | | |||||| | Sbjct 100795 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 100736 Query 10508 GGGGACTGTCAATCATCTCGGACCTGGCT 10536 | ||||||||||||| | || |||||| Sbjct 100735 GCGGACTGTCAATCAAATGTGATCTGGCT 100707 >seq3050 Length=242780 Score = 114 bits (126), Expect = 2e-20 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || || || || ||||| |||||||| ||||| ||| | Sbjct 71571 GCTGTGTTGACAAGGTTGAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCT 71630 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || || ||| ||| | | ||| || || | |||||| |||||||| | ||| || Sbjct 71631 GGAGAACAAATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATC 71690 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 |||||||| || ||||||| ||| | ||||| | | || || | ||||| Sbjct 71691 ATGCTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAAC 71750 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | || |||| ||| ||||| || | |||||||| || || ||||||||||| ||| Sbjct 71751 TCTAGGGCATCGATGTCACCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 71810 Query 9176 ACA 9178 || Sbjct 71811 GCA 71813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723199470488200