Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3071 145 2e-29 seq2959 141 2e-28 seq5954 127 5e-24 seq3025 122 2e-22 seq5338 120 7e-22 seq650 120 7e-22 seq1738 98.7 2e-15 seq248 98.7 2e-15 seq3380 89.7 1e-12 seq12379 87.8 4e-12 seq568 84.2 5e-11 >seq3071 Length=285302 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || || | ||||||||||||| ||||||||||| |||||| Sbjct 253160 CGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 253219 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||||||| || || ||||| || |||||| || ||| ||||||| Sbjct 253220 TGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCT 253279 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||||| | |||||| || | | Sbjct 253280 TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGC 253339 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || |||| ||||| || Sbjct 253340 GTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTG 253377 >seq2959 Length=310600 Score = 141 bits (156), Expect = 2e-28 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| |||||| |||| | ||| | |||||| Sbjct 279632 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 279691 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| ||||||||||| || || || ||| ||| Sbjct 279692 TCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 279751 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 279752 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 279811 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641 || ||||| | || ||||| || ||||| |||||| |||| Sbjct 279812 TTGCCCGTCAAGGTCTTCACGAAGATTTG---CATTTTGACCTT 279852 >seq5954 Length=158713 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || | || || ||||||| ||||| ||||||||||| |||||| Sbjct 21672 CGAAGTCTCAACACCAGATAAAGGGTGGACTCCTCTTGGATGTTGTAGTCAGGCAAAGTA 21613 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || | |||||| || | |||| | || ||| |||||||| Sbjct 21612 CAGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCAGATCAGGAGAAATTCCT 21553 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 | ||||| ||||| ||| || ||| | |||||| | || || || | | Sbjct 21552 CCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTAAGGGCTCAACCTCGAGC 21493 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || | || || ||||| ||||| || Sbjct 21492 GTGATGGTTTTCCCTGGAAGGGTCTTCACGAAAATCTG 21455 >seq3025 Length=599017 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||| | || || | ||||| Sbjct 117923 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 117982 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| || || ||||| || Sbjct 117983 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 118042 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 118043 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 118102 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | |||||||| || || || Sbjct 118103 CTTACCAGTTAAGGTTTTCACGAAGATCTG 118132 Score = 105 bits (116), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||| | || || | ||||| Sbjct 115665 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 115724 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| || || ||||| || Sbjct 115725 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 115784 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 115785 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 115844 Query 199597 CTT 199599 ||| Sbjct 115845 CTT 115847 >seq5338 Length=92157 Score = 120 bits (132), Expect = 7e-22 Identities = 157/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 199419 GGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTT 199478 |||| ||||| || || ||||| || |||| |||||| |||| | ||| | ||||||| Sbjct 52159 GGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTT 52218 Query 199479 CCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCT 199538 |||||||||| || || |||||||| ||||||||||| || || || ||| |||| Sbjct 52219 CCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCT 52278 Query 199539 GAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 | ||||| ||||||| |||| |||||| | | | || |||| ||||| || | Sbjct 52279 GGATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTT 52338 Query 199599 TACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | | || || || |||| || ||||| |||||| Sbjct 52339 TGCTGGTCAGGGTCTTCATGAAGATTTG---CATTTT 52372 >seq650 Length=610773 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| || || || || || ||||||||||||| | ||||||||| |||||| | Sbjct 359078 GAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTAC 359137 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||||||||||| || || ||||| || | |||||| || ||| |||||||| Sbjct 359138 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTT 359197 Query 199530 CTCGCTCCTGAATCTT 199545 | ||||| ||||| Sbjct 359198 CCTTATCCTGGATCTT 359213 >seq1738 Length=291085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | ||| ||||| ||||||| |||||| | | || |||| ||||| Sbjct 20109 AGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCC 20050 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || || || || | ||||||||| || || ||||| || Sbjct 20049 TCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 19990 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 19989 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 19930 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||| | || || |||||||| || || Sbjct 19929 TTGCCCATCAGGGTCTTCACAAAGATCTG 19901 >seq248 Length=567972 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || | || ||||| || | | ||| | ||||| Sbjct 1471 AGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAGAGAGTGCAATCATCT 1530 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| |||| ||| || ||| || ||| ||| Sbjct 1531 TCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTGGAATGCCCTCTTTGTCC 1590 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 | ||||| |||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 1591 AGGATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1650 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| || ||||| |||||| Sbjct 1651 TTGCCGGTTAGGGTCTTCACGAAGATTTG---CATTTT 1685 >seq3380 Length=137789 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||||| ||| || | |||||||||| |||||| || ||||||| Sbjct 108304 CCTTTTGGATGTTGTAGTCAGACAATGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGA 108363 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||| || ||| ||||||| Sbjct 108364 TCAGCCTCTGCTGATCAGGAGGAATTCCT 108392 >seq12379 Length=26009 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||| |||| |||| || || || ||||||||||| | ||||||| ||| ||||| | Sbjct 21936 GAAGCCTCAATACAAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGGCAGGCAAAGGAC 21877 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 || ||||||||||||| || || ||||| || | || ||| || ||| |||||||| Sbjct 21876 GGCCGTCTTCCAGCTGCTCACCAGCAAAGATCAGCCTCTACTGATCAGGAGGAATTCCTT 21817 Query 199530 CTCGCTCCTGAATCTT 199545 | ||| | ||||| Sbjct 21816 TCCTCTCGGGGATCTT 21801 >seq568 Length=390548 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| || || || || || ||||||||||||| |||||| |||| |||||| Sbjct 112724 GAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTACTCAGACAAAGTAA 112783 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAG 199503 ||||||||||| ||||| || || ||||| || Sbjct 112784 GGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 112817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178039124499341