Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq248 138 1e-27 seq1738 134 2e-26 seq2959 131 2e-25 seq5338 127 2e-24 seq3025 123 3e-23 seq22505 114 1e-20 seq5999 114 1e-20 seq17328 100 3e-16 seq3071 89.7 6e-13 seq8984 87.8 2e-12 >seq248 Length=567972 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| ||||| | ||| | ||||| |||| || ||| || | |||||||| Sbjct 1448 ATTAATAGCCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGT 1507 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 | ||||| ||||||| || || || ||||||||||| || || || | |||| ||| Sbjct 1508 AATCGGAGAGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGG 1567 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 || || | || ||| ||||||| ||||||| ||| | || | | ||||| || | Sbjct 1568 GGGGTGGAATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACTGG 1627 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| |||| |||||||| ||||| || || || || || ||||||||||||||| Sbjct 1628 GCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATTTTG 1686 >seq1738 Length=291085 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||||| || ||| ||||||||||||||| |||| || || || | || || Sbjct 20107 CACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCCTC 20048 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || ||||||| | ||||||||| | || | || |||||||| Sbjct 20047 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 19988 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| || | || || || | |||||||| || Sbjct 19987 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 19928 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||| || || |||||||| ||||| ||| Sbjct 19927 GCCCATCAGGGTCTTCACAAAGATCTGCATGTTG 19894 >seq2959 Length=310600 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || ||| || ||||| ||||| || || Sbjct 279616 GCCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 279675 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | ||||||||||||| || Sbjct 279676 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 279735 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||| || ||| |||||| ||| | || | | ||||| || | || || Sbjct 279736 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGAC 279795 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| |||||||||| || || || ||||||||||||||| Sbjct 279796 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTTG 279847 >seq5338 Length=92157 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||| || ||||| ||||| || || |||||||| | || || Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | ||||||||||||| || | || ||| || ||| | Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | ||||| |||| |||| |||| |||||||||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | ||||| || || | ||||||||||||||| Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTTG 52373 >seq3025 Length=599017 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| ||||||||||| || ||||| | Sbjct 117921 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 117980 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || |||||| Sbjct 117981 TCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 118040 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | |||||||| | || || |||| |||||| Sbjct 118041 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 118100 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || | ||||| || ||||| |||||| Sbjct 118101 GTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 118136 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| ||||||||||| || ||||| | Sbjct 115663 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 115722 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || |||||| Sbjct 115723 TCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 115782 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | |||||||| | || || |||| |||||| Sbjct 115783 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 115842 Query 46559 GTTTT 46563 || || Sbjct 115843 GTCTT 115847 >seq22505 Length=6242 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||||| ||||| || ||| || ||||| ||||| |||| Sbjct 3179 TGCCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGG 3238 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || || |||||||||||||| ||||||| | ||| ||||| | | Sbjct 3239 ACAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTG 3298 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||||| || | || || || | | | Sbjct 3299 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGA 3358 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| |||||| |||| || || ||||| || ||||| ||| Sbjct 3359 CCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 3411 >seq5999 Length=119422 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||||| ||||| || ||| || ||||| ||||| |||| Sbjct 3064 TGCCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGG 3005 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || || |||||||||||||| ||||||| | ||| ||||| | | Sbjct 3004 ACAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTG 2945 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||||| || | || || || | | | Sbjct 2944 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGA 2885 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| |||||| |||| || || ||||| || ||||| ||| Sbjct 2884 CCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 2832 >seq17328 Length=23406 Score = 100 bits (110), Expect = 3e-16 Identities = 161/226 (71%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAA--TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||| | |||||| | ||| || ||||| || ||||| ||||||| ||| ||||| || Sbjct 1392 ACGAAGCACCAGGTACAAAATGGACTCT--TTCTGGATGTTGTAGTAGGACAGAGTCCGG 1449 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT-CGGCCGGCACGCTCTC 46494 | || || ||||||||||| || ||||||| | |||||||| || || ||| || Sbjct 1450 CCATCCTCTAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTGAGGTAGGATGGCT-TC 1508 Query 46495 CTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCG- 46553 |||||| |||||| ||||| || | | ||||| || | | || || | | Sbjct 1509 CTTGTCTTGGATCTTGGCCTTGATGTTCTCAATGGTGTCACTGGGCTGGACCTCAAGAGT 1568 Query 46554 --TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| | ||||| ||||| ||||| |||||||| ||||| ||| Sbjct 1569 GATGATGATGTTGCCTGTCAGAGTTTTCACAAAGATCTGCATGTTG 1614 >seq3071 Length=285302 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 46381 CAACACCAGATGCA--ATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||||| | ||| | |||||||||||| |||||||| || | ||| | | Sbjct 253168 CAACACCAGATGAAGGATGGA--CTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCCA 253225 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| |||||| || | || | | ||||| Sbjct 253226 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTCCTTA 253285 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| | ||| || || | ||||||| Sbjct 253286 TCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGTGATG 253345 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || || || | || || ||||| Sbjct 253346 GTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 253380 >seq8984 Length=72256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46387 CAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAG 46446 ||| ||||| || ||| || ||||| ||||||||||| || || || | || || || Sbjct 54603 CAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAG 54544 Query 46447 CTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGAT 46506 |||||||||||| ||||||| | ||||||||| | || | || |||||||| ||| Sbjct 54543 CTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGAT 54484 Query 46507 CTT 46509 ||| Sbjct 54483 CTT 54481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564825613461960