Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq137 149 6e-31 seq2959 136 4e-27 seq248 129 6e-25 seq3025 127 2e-24 seq5338 111 2e-19 seq22505 96.9 3e-15 seq5999 96.9 3e-15 >seq137 Length=869495 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||||||||| ||||| ||||| || || || || || || ||||| ||||| || Sbjct 369128 ACCAGATTTTCATTGACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATA 369187 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGC-TCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 ||||| | ||||| | ||| ||||| ||||||| | | |||||||| |||||||| Sbjct 369188 AAATGTCTCTCGTCG-GGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCAC 369246 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 |||||| | ||||| || || ||||||||||| |||||||| ||| || || || Sbjct 369247 CTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTA 369306 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || |||||||||| ||| || |||||||| ||||| Sbjct 369307 TTCGATGGGAAAAACCACGAAGCGGCGGGGATTTTC 369342 >seq2959 Length=310600 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || | |||||||| ||||||||| | || |||||| || Sbjct 279846 AAAATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTCGAGCCC 279787 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || |||||||| || ||| |||| Sbjct 279786 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGA 279728 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| |||||||| || | ||||| || || || Sbjct 279727 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 279668 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || || | || ||||| |||| || ||| | || || ||| Sbjct 279667 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGGGGTGGC 279616 >seq248 Length=567972 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 1685 AAAATGCAAATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 1626 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || ||||| ||||||||||| ||||| || | Sbjct 1625 AGTGACACCATCGAGAATGTGAAGGTGAAGATCCTGGACAAAGAGGGCATTCCACCCCCC 1566 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || |||| ||||| | || ||||| |||||||| || || |||| ||| ||| ||| Sbjct 1565 CATCAGCAACTCATCTTTGCTGGCAAGCAGCTGGAAGATGATTGCACTCTCTCCGATTAC 1506 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||| | || || | || ||||| |||| || ||| | ||||| ||| Sbjct 1505 AATATCTAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGGC 1455 >seq3025 Length=599017 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || || ||||||||| | || |||||| ||| Sbjct 118136 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 118077 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || |||| ||||| || || || ||| | |||| Sbjct 118076 CGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACC 118018 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 118017 AGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACA 117958 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || || | || ||||| |||| ||||| Sbjct 117957 ACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCG 117921 Score = 107 bits (118), Expect = 2e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 38274 AAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAAT 38332 || ||||||||| | || |||||| ||| ||||| | | | |||| | || | || || Sbjct 115847 AAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATCGAGAACG-TCAAGGCCAAGAT 115789 Query 38333 CCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCT 38392 || ||||| || || || ||| | ||||| ||| |||| || | || ||||| ||||| Sbjct 115788 CCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCT 115729 Query 38393 GGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||| || | |||||||| ||||||||||||||| || || | || ||||| |||| Sbjct 115728 GGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 115669 Query 38453 GCTGCG 38458 ||||| Sbjct 115668 CCTGCG 115663 >seq5338 Length=92157 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||| | || || || || |||||||||||||| | || || | | | Sbjct 52372 AAAATGCAAATCTTCATGAAGACCCTGACCAGCAAAACCATCACCCTGGAGGTGGCGCCG 52313 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || |||||||| || ||| |||| Sbjct 52312 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGA 52254 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| |||||||| || | ||||| || || || Sbjct 52253 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 52194 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||| || || | || ||||| |||| Sbjct 52193 CAACATCCAGAAAGAGTCCACCCTGCACCTGGT 52161 >seq22505 Length=6242 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| ||||| || || || || | |||||| |||||||| | || ||| || || Sbjct 3410 AACATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCC 3351 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| || || || || | ||| Sbjct 3350 AGTGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 3291 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | || ||||| ||| ||| Sbjct 3290 CATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTAC 3231 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || |||| ||||||| ||| || | || ||| Sbjct 3230 AACATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGGC 3180 >seq5999 Length=119422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| ||||| || || || || | |||||| |||||||| | || ||| || || Sbjct 2833 AACATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCC 2892 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| || || || || | ||| Sbjct 2893 AGTGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 2952 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | || ||||| ||| ||| Sbjct 2953 CATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTAC 3012 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || |||| ||||||| ||| || | || ||| Sbjct 3013 AACATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGGC 3063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499807530056320