Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1213 127 8e-24 seq661 107 8e-18 seq12293 95.1 5e-14 seq730 89.7 2e-12 seq549 84.2 9e-11 >seq1213 Length=618575 Score = 127 bits (140), Expect = 8e-24 Identities = 195/278 (70%), Gaps = 9/278 (3%) Strand=Plus/Minus Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || || || |||||||||||||| |||| | || || ||||| ||||| || Sbjct 362239 GTGATCACAGTCCCTGCTTATTTCAATGACTCACAGCAACAGGCCACTAAGGATGCTGGC 362180 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || || ||||| ||||||| |||||| | |||| ||||| | |||| || || || ||| Sbjct 362179 CAGATAGCTGGGCTAAATGTACTTCGAGTGATTAGTGAACTTCCAGCTGCCGCCCTGGCA 362120 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| || ||| | || | ||||||||| | | | || | || ||| ||| Sbjct 362119 TATGGTCT-GGACA--------AATCTGAAGAAAAAGTCACTGTTGTGTATGGTTTAGGT 362069 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || ||||| ||||| |||| | || || || || || |||| ||| || || | Sbjct 362068 GGTGGAACCTTTGATATTTCTATCCTGGAAACTGTGGAAGGAGTATCTGAGGTGAAATCC 362009 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 |||||||| ||| || |||| ||||||| |||| Sbjct 362008 ACCAATGGGGATGCTTCCTTAGGCAGTGAAGACTTTGA 361971 >seq661 Length=456772 Score = 107 bits (118), Expect = 8e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || || || |||||||| | || ||||| ||||| Sbjct 103656 GTTACCAATGCTGTGGTCACAGTGCCAGCCTACTTCAATGACTCTCAGCGGCAGGCAACA 103597 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | ||||| ||||||||||| || || || || || Sbjct 103596 AAAGATGCTGGAACTATTGCTGGCCTCAATGTCCTTCGAATTATCAACGAGCCGACTGCT 103537 Query 451433 GCTGCTCTAGCATATGGACTAG 451454 |||||| | || |||||||||| Sbjct 103536 GCTGCTATTGCCTATGGACTAG 103515 >seq12293 Length=26384 Score = 95.1 bits (104), Expect = 5e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96050 GCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGAT 96109 ||||| | |||||||||||| || || || ||||| ||| | | | || | |||| Sbjct 19733 GCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCACATAGCAGAGAACAAATGGAT 19792 Query 96110 AAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAA 96169 ||||| |||||| ||| |||| || || ||| | | ||| |||||| | |||| Sbjct 19793 AAAAGAACTTTAGAAATTGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGACAA 19852 Query 96170 ATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGA 96229 || || || | ||||||||||||||||||| ||| ||||| || ||||| Sbjct 19853 ATGTTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGT 19912 Query 96230 GGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAG 96289 || || | || ||||| ||||||| |||| || |||||| ||||| | ||| Sbjct 19913 GGTTTGAAGGGGCAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGATAT 19972 Query 96290 GG 96291 || Sbjct 19973 GG 19974 >seq730 Length=744415 Score = 89.7 bits (98), Expect = 2e-12 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||| || |||||||| || | ||||| |||| || || ||||| || |||||| Sbjct 450655 AAGCCATACATTCAAGTTGATATTGGAGGTGGGCAAACCAAGACATTTGCCCCAGAAGAA 450714 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATAT 451300 ||||| | |||||||||||||| |||||||||||||| ||| |||| Sbjct 450715 ATTTCTGCCATGGTTCTTACTAAGATGAAAGAAACAGCTGAAGCATAT 450762 >seq549 Length=376457 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || ||||| | ||||| |||||| | ||||||||||| Sbjct 44902 GCCACTAAGGATGCTGGCCAGATAGCTGGGCTGAATGTACTTCGAGTGATTAATGAACCC 44961 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| ||||| || |||||||| || | ||||| |||| Sbjct 44962 ACAGCTGCTGCCCTGGCATATGGTCTGGACAAATCCGAAGA 45002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974239486487684