Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq16658 93.3 3e-14 seq16616 93.3 3e-14 seq5761 93.3 3e-14 >seq16658 Length=12785 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| ||||| || || ||| | ||||||| || ||| || | | |||| Sbjct 5837 CCTCATGCAGCACATGGCATGTGTATCTTTGCTCTTCTCCTGAAGGCACCACCACAGCTG 5778 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || |||||||| || | | ||| | | | Sbjct 5777 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCAATAAGATCCATGTCCTGGG 5718 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| |||||||||||||| || Sbjct 5717 TCAGGTCCTCCTCATCCCTCTGCCAGGTCAGGGTGATGTCTGCAGGATAGAAGCCCAGGG 5658 Query 529 CCCAACATTTTAGTGT 544 |||| || || || || Sbjct 5657 CCCAGCACTTCAGGGT 5642 >seq16616 Length=18857 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 410 CCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGT 469 ||||||||| || |||||||| || || |||||||| |||||| || ||| | | ||| Sbjct 17245 CCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATTTCCTGAGT 17304 Query 470 CAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGGC 529 | ||| ||| || || | ||||| || | ||| ||||| ||||||||||| || ||| Sbjct 17305 CTGTTCCTCCTCTTCCCTTTGCCAGGTCAGGGTGATGTCAGCAGGATAGAAACCCAAGGC 17364 Query 530 CCAACA 535 ||| || Sbjct 17365 CCAGCA 17370 >seq5761 Length=225592 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| ||||| || || ||| | ||||||| || ||| || | | |||| Sbjct 6949 CCTCATGCAGCACATGGCATGTGTATCTTTGCTCTTCTCCTGAAGGCACCACCACAGCTG 7008 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || |||||||| || | | ||| | | | Sbjct 7009 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCAATAAGATCCATGTCCTGGG 7068 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| |||||||||||||| || Sbjct 7069 TCAGGTCCTCCTCATCCCTCTGCCAGGTCAGGGTGATGTCTGCAGGATAGAAGCCCAGGG 7128 Query 529 CCCAACATTTTAGTGT 544 |||| || || || || Sbjct 7129 CCCAGCACTTCAGGGT 7144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397463991936888