Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2959 152 1e-31 seq3025 140 7e-28 seq5338 134 3e-26 seq248 131 4e-25 seq1738 118 2e-21 seq14192 107 4e-18 seq22505 102 2e-16 seq5999 102 2e-16 seq17328 98.7 2e-15 seq8984 89.7 1e-12 seq3609 84.2 5e-11 >seq2959 Length=310600 Score = 152 bits (168), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 279635 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 279694 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 279695 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 279754 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| || || || ||||| | ||| Sbjct 279755 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATGGTC 279811 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| | |||||||| Sbjct 279812 TTGCCCGTCAAGGTCTTCACGAAGATTTGCATTT 279845 >seq3025 Length=599017 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 117915 CTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTG 117974 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || |||||||| ||||| ||||| || | || ||||| || || |||||| Sbjct 117975 CGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCT 118034 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| || || || |||||||||||| |||||||| || || || ||| Sbjct 118035 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGG 118094 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||| || || || ||||| ||||| | |||||| Sbjct 118095 GTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 118136 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 115657 CTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTG 115716 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || |||||||| ||||| ||||| || | || ||||| || || |||||| Sbjct 115717 CGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCT 115776 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||||| || || || |||||||||||| |||||||| Sbjct 115777 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 115817 >seq5338 Length=92157 Score = 134 bits (148), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| |||| || ||||| | || Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTCGGCGCCACCTCCAGGGTGATGGTT 52337 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | |||| || || | ||| | |||||||| Sbjct 52338 TTGCTGGTCAGGGTCTTCATGAAGATTTGCATTT 52371 >seq248 Length=567972 Score = 131 bits (144), Expect = 4e-25 Identities = 166/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || ||||||||||| | ||||||||||||| ||||| Sbjct 1461 TCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAGAGAGT 1520 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||| |||||||| || || ||||| ||| | || ||| || |||||||| Sbjct 1521 GCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTGGAATGCC 1580 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| | || || ||| || ||||| |||||||| ||| ||||| || Sbjct 1581 CTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 1637 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| | ||||| || || | || || ||||| | |||||||| Sbjct 1638 CAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATTT 1684 >seq1738 Length=291085 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||||||| |||||||| ||| || || | ||||| || Sbjct 20106 ACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCCTCC 20047 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || ||||| || || |||||||| |||||||| Sbjct 20046 AGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 19987 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| || || ||||| || | ||| Sbjct 19986 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTC 19930 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||| || || || || | ||||| Sbjct 19929 TTGCCCATCAGGGTCTTCACAAAGATCTGCAT 19898 >seq14192 Length=18816 Score = 107 bits (118), Expect = 4e-18 Identities = 147/202 (73%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | | ||| ||||| | ||||||||||| || || ||||| || | || || Sbjct 10460 CTGAGGCAGAGAACCAGGTGCAAGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTG 10519 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT-TGTTGGTC--TGGAGGAATG 195036 | ||||||| | |||||| || || ||||| || | || ||||| || |||||| Sbjct 10520 CAGACATCTTCCAACTGCTTGCCAGCAAAGAT--TTCCTCTGCTGGTCAGGGGGGGAATG 10577 Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 || | |||||| ||||| ||| |||||| ||||||||| |||| ||| || || Sbjct 10578 CCCTTTTTGTCATGAATCTTTGCCTTGACCTTCTCAATGATGTCTCTGGGTTCAACCTCC 10637 Query 195097 AGGGTAACCGTCTTTCCTGTCA 195118 ||||||| ||||| ||||||| Sbjct 10638 AGGGTAATGGTCTTGCCTGTCA 10659 >seq22505 Length=6242 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | |||||||||||| || || |||||||||| || || | ||||| || Sbjct 3199 ACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTCC 3258 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || ||||| || || |||||||| |||||||| Sbjct 3259 AGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTGG 3318 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||||| |||| ||||| || Sbjct 3319 ATCTTGGCCTTGAAATTCTTGATGGTATC 3347 >seq5999 Length=119422 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | |||||||||||| || || |||||||||| || || | ||||| || Sbjct 3044 ACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTCC 2985 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || ||||| || || |||||||| |||||||| Sbjct 2984 AGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTGG 2925 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||||| |||| ||||| || Sbjct 2924 ATCTTGGCCTTGAAATTCTTGATGGTATC 2896 >seq17328 Length=23406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||| | | |||||||||| || || ||||| | || ||||| | ||||| || Sbjct 1399 ACCAGGTACAAAATGGACTCTTTCTGGATGTTGTAGTAGGACAGAGTCCGGCCATCCTCT 1458 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || |||| || |||| || | ||| |||| |||||||| Sbjct 1459 AGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTGAGGTAGGATGGCTTCCTTGTCTTGG 1518 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||||| ||||||||||||||| Sbjct 1519 ATCTTGGCCTTGATGTTCTCAATGGTGTC 1547 >seq8984 Length=72256 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| | |||||||||||| || || ||||| |||| || || | ||||| || ||| Sbjct 54602 AGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGC 54543 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || || || || | || ||||| || || |||||||| |||||||| || Sbjct 54542 TGCTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATC 54483 Query 195055 TT 195056 || Sbjct 54482 TT 54481 >seq3609 Length=131252 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/164 (72%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||| |||| |||||| ||||| ||||| | |||||||| | || ||||| || Sbjct 106619 CCCACCTTCTGACTGCTTGCCTGCAAAGATTTGCTTCTGTTGGTCAAGGGGTATGCCCTC 106678 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGG 195099 ||| || ||||| || ||| || ||||||||||||| | | || |||||||| ||| Sbjct 106679 TTTATCCTGAATCTTGACCTTCACATTCTCAATGGTGTTACTGGAC--TCCACTTCTAGG 106736 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTA 195143 |||| ||||| ||| || || || || | ||||||||| Sbjct 106737 GTAATGGTCTTGTGGGTCTGGGTCTTCACAAAGATTTGCATTTA 106780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108651103442441