Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1738 96.9 2e-15 seq3025 95.1 8e-15 seq22505 93.3 3e-14 seq5999 93.3 3e-14 >seq1738 Length=291085 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||| || || || ||| | || ||| | || |||| ||| Sbjct 20106 ACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCCTCC 20047 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || |||||||| || | |||||||| | || | || |||||||| Sbjct 20046 AGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 19987 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | || ||||| | Sbjct 19986 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 19929 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||| | || |||||||||||||||||||| || Sbjct 19928 TGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 19895 >seq3025 Length=599017 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 117909 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 117968 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 117969 AGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 118028 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | || | || ||| || Sbjct 118029 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACC 118088 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || | || ||||| ||||||||||| Sbjct 118089 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 118135 >seq22505 Length=6242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| || || || ||| | || |||| ||| Sbjct 3199 ACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTCC 3258 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||||||||| || | || ||||| | || | || |||||||| Sbjct 3259 AGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTGG 3318 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| |||| || || || | |||| || || || || | || ||||| | Sbjct 3319 ATCTTGGCCTTGA--AATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCT 3376 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 | ||| | || ||||||||||| |||||||| || || Sbjct 3377 TGCCCATCAGGGTCTTCACAAATATCTGCATGTTGGT 3413 >seq5999 Length=119422 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| || || || ||| | || |||| ||| Sbjct 3044 ACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTCC 2985 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||||||||| || | || ||||| | || | || |||||||| Sbjct 2984 AGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTGG 2925 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| |||| || || || | |||| || || || || | || ||||| | Sbjct 2924 ATCTTGGCCTTGA--AATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCT 2867 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 | ||| | || ||||||||||| |||||||| || || Sbjct 2866 TGCCCATCAGGGTCTTCACAAATATCTGCATGTTGGT 2830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324402451036344