Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4138 194 2e-44 seq137 111 2e-19 seq9705 93.3 5e-14 >seq4138 Length=267950 Score = 194 bits (214), Expect = 2e-44 Identities = 347/503 (69%), Gaps = 9/503 (2%) Strand=Plus/Plus Query 18619 TCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCATTTTTTGA 18675 ||| ||||||| | |||||||||||| | ||||| ||| || |||| | ||| Sbjct 162533 TCAGCATCCAAGGTGAAAGAATTCTCTGCT---GAATTTGACATCACCTCCATCCTCTGA 162589 Query 18676 TATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATA 18735 || ||| | |||| || |||||||| || || || || |||||||| ||| |||||| Sbjct 162590 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATG 162649 Query 18736 AAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTA 18795 | ||||| ||||||| ||| || | || || |||| |||| || | | || || Sbjct 162650 AGGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTG 162709 Query 18796 TCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACA 18855 |||| || |||| || || ||||||| || ||||| || || | || ||| Sbjct 162710 TCCGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACA 162769 Query 18856 GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACA 18915 || || || || || ||||| || || |||| | ||||| ||||| || | Sbjct 162770 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCA-CTGATG--ATTTCTTGT 162826 Query 18916 ACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAA 18975 ||||| || || || || || || | ||||||| || ||||| |||| Sbjct 162827 ACTCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGACACAG 162886 Query 18976 TGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCT 19035 ||| ||||| ||||| || || | || || |||||||| | |||||||||||||| Sbjct 162887 GGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCC 162946 Query 19036 CttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCT 19095 | ||| || | ||||||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 162947 CGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCA 163006 Query 19096 GCAAAAGCAACTAGTCTTTCTCC 19118 ||||| || || | || |||||| Sbjct 163007 GCAAAGGCCACAACTCGTTCTCC 163029 >seq137 Length=869495 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | || || |||||||| | |||||||||||||| | ||| | Sbjct 366585 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366644 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || |||||||| || ||||| | Sbjct 366645 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 366704 Query 19103 CAACTAGTCTTTCTCC 19118 | || | || |||||| Sbjct 366705 CCACAACTCGTTCTCC 366720 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCATTTTT 18672 || ||| ||||||| | |||||||||||| | ||||| ||| || ||||| | Sbjct 364688 AAGTCAGCATCCAAGGTGAAAGAATTCTCT---GTTGAATTTGACATCACCCCCATCCTC 364744 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| ||| | |||| || |||||||| || || || || |||| ||| ||| |||| Sbjct 364745 TGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCC 364804 Query 18733 ATAAAATCAAATGGATTTTTTACATT 18758 || || ||||| ||||||| ||| || Sbjct 364805 ATGAAGTCAAACGGATTTTCTACTTT 364830 >seq9705 Length=66704 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 ||||||| ||| ||| | || || | ||| || | |||||||| |||||| ||||| Sbjct 13139 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 13080 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 || ||||| || | || || ||||||||||| ||| || ||||| || || || Sbjct 13079 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATGGCAGCGTCAATATCTTCTTTGTGAATC 13020 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 || | |||||| | ||| ||||||| || ||||||||| Sbjct 13019 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 12981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | || || || | || || ||||| || || || || || || Sbjct 25039 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 24980 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 24979 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 24920 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 24919 TTTCTTATACCATA 24906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561698298969720