Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq661 129 5e-24 seq1213 91.5 1e-12 seq12821 89.7 4e-12 seq223 87.8 1e-11 >seq661 Length=456772 Score = 129 bits (142), Expect = 5e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || |||||||| || || || || || Sbjct 103656 GTTACCAATGCTGTGGTCACAGTGCCAGCCTACTTCAATGACTCTCAGCGGCAGGCAACA 103597 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||||| |||||||| || || |||||| Sbjct 103596 AAAGATGCTGGAACTATTGCTGGCCTCAATGTCCTTCGAATTATCAACGAGCCGACTGCT 103537 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| |||||||| ||||| Sbjct 103536 GCTGCTATTGCCTATGGACTAGATAA 103511 >seq1213 Length=618575 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || || || || || ||||| ||||||||||| | || || ||||| |||||||| Sbjct 362239 GTGATCACAGTCCCTGCTTATTTCAATGACTCACAGCAACAGGCCACTAAGGATGCTGGC 362180 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 | || ||||| || ||||| ||||| | || | ||||| | | ||||| || || ||| Sbjct 362179 CAGATAGCTGGGCTAAATGTACTTCGAGTGATTAGTGAACTTCCAGCTGCCGCCCTGGCA 362120 Query 550523 TATGGACTTGATAAA 550537 ||||| || || ||| Sbjct 362119 TATGGTCTGGACAAA 362105 >seq12821 Length=31745 Score = 89.7 bits (98), Expect = 4e-12 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || ||||| |||| | || || | || | || Sbjct 31171 GGTATTGATCTTGGCACCACCTACTCCTGTGTGAGTGTCTTCCAGCATAGGAAGGCAGAG 31112 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || |||||| |||| || ||| | |||||| |||| || || | Sbjct 31111 ATAATTGCCAATGACCAGGGTAACTGAACCACACCAACCTATGTTGCTTTTACTGACATG 31052 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGT-AATCCTACCAATACTAT 550176 |||| || |||| ||| | || || ||| || || | || || |||||| | | Sbjct 31051 GAACGATTGATTGGGGATACTGCGAAGAATC-AGGTTGTGATGAAACCCACCAATGCAGT 30993 Query 550177 TTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATAT 550236 ||||||||| ||| | || ||| | || ||| ||||| | ||| ||| | || || Sbjct 30992 TTTTGATGCCAAATACCTGATCGGATGTAGGTTTGATGATGCTGTTGTACAGTCTGACAT 30933 Query 550237 GAAGCATTGGCCTTTC 550252 |||| | || || ||| Sbjct 30932 GAAGTACTGTCCCTTC 30917 >seq223 Length=927506 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || || ||||||||||| || || || ||||| |||||| Sbjct 756635 GCTGTGATCACAGTCCCTGCTTACTTCAATGACTCACAGCGACAGGCCACTAAGGATGCT 756694 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || |||| || ||||| ||||| | || | | |||||| ||||||| || Sbjct 756695 GGCCAGATATCTGGGCTAAATGTACTTCGAGTGATTAGTAAACCTATATCTGCTGCCCTG 756754 Query 550520 GCATATGGACTTGATAAA 550537 |||||||| || || ||| Sbjct 756755 GCATATGGTCTGGACAAA 756772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026206328272270