Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq12257 96.9 4e-15 seq1213 91.5 2e-13 seq5267 86.0 8e-12 >seq12257 Length=46842 Score = 96.9 bits (106), Expect = 4e-15 Identities = 175/253 (69%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| ||| | | || | ||| |||| || |||| | |||| ||| ||| ||||| Sbjct 25383 ACTGAGTAACTTAGAAGTTATCAACCACACTCGCCTGTTTGAGAACGGGACCTGTGAGAT 25442 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGG----AGG 2322 ||| ||||||||| |||| ||| | || ||| | | || | ||| |||| ||| Sbjct 25443 CCACCTGACCTGTACTGTGGAGAACCCAAATCAGA----CTGCCTCAGTTGGGTGGCAGG 25498 Query 2323 CCTTGGGCAAGA-CGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAAC 2381 ||| || || | | | | || | || || || |||| |||||||||||| | ||| Sbjct 25499 CCTCAGGAAACATCTCAT-TAGGGGACCCAAATCTCATTGTCTCCTGGGACCCAAAGAAT 25557 Query 2382 AGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACG 2441 | |||| |||| ||||| ||| ||| ||| |||| |||||||| ||| || | Sbjct 25558 TCCCGTGACCAGAGTTACACCTGCCACGCTCTGAACCCTGTCAGCAATCTGTCTGTCTCT 25617 Query 2442 GTCTCGGCCCAGA 2454 ||||| ||||||| Sbjct 25618 GTCTCTGCCCAGA 25630 >seq1213 Length=618575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/270 (68%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 2190 CTGAGGATCTTCCGGAAACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAG 2249 |||||| ||||| |||||| ||| | | || | ||| |||| || |||| | || Sbjct 106670 CTGAGGGTCTTCGAACAACTGAGTAACTTAGAAGTTATCAACCACACTCGCCTGTTTGAG 106611 Query 2250 AATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCC 2309 || ||| ||| |||||||| ||||||||| |||| ||| | || ||| | | || | Sbjct 106610 AACGGGACCTGTGAGATCCACCTGACCTGTACTGTGGAGAACCCAAATCATA----CTGC 106555 Query 2310 TTCAAATGGG----AGGCCTTGGGCAA-GACGCTTCTACGCGAGCCCAACCTCACGACCT 2364 ||| |||| |||||| || || | | | | || | | || || |||| || Sbjct 106554 CTCAGTTGGGTGGCAGGCCTCAGGAAATGTCTCAT-TAGGGGTCCCAAATCTCATTGTCT 106496 Query 2365 CCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGA 2424 |||||||||| | ||| | |||| |||| ||||| ||| | | ||| |||| | Sbjct 106495 CCTGGGACCCAAAGAATTCCTGTGACCAGAGTTACACCTGCCACACTCTTAACCCTGTCA 106436 Query 2425 GCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454 ||||||| ||| || | ||||| |||||| Sbjct 106435 GCAATCTGTCTGTCTCTGTCTCTTCCCAGA 106406 >seq5267 Length=93506 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || |||||||| |||| ||||||||||| ||| || || ||||| || | | |||| Sbjct 84803 CCCTCATGTTGCACGTGGCATGTGTATCTGTGCTCCTCCCCGGAAGGCACCATCACAGCT 84862 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || || || | || || | | |||| | || || Sbjct 84863 GCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGG 84922 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || ||||| || || | | ||| || | |||| ||||| || || || || | | Sbjct 84923 GTCTGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTTATCTCAGCTGGGTAGAATCCAAGA 84982 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 84983 GCCCAGCACC 84992 Score = 82.4 bits (90), Expect = 1e-10 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 14190 ACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGA 14249 |||| ||||||||||| ||| || |||||||| || || | |||| |||| || || Sbjct 72349 ACGTGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTGCCCACTTCTGG 72408 Query 14250 AACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCT 14309 || || ||||| || ||||| | || || | | ||| | || || | || || || Sbjct 72409 AAGGTTCCATCCCCTGCTGGTCTGGTCTCCACCAACTCCATGTCCTGGGTCTGGTCCTCC 72468 Query 14310 CCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 || |||| | ||| || | | || || | ||||| ||||||| ||||||||||| Sbjct 72469 CCATCTCTTTGCCAGGTCAGGATGATCTCCGAAGGATAGAAACCCAGAGCCCAGCACC 72526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628823642345080