Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2959 87.8 1e-12 seq3071 86.0 5e-12 seq686 82.4 6e-11 >seq2959 Length=310600 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || || ||||||||||| Sbjct 279616 GCCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 279675 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || ||||| || |||||||| || || | ||| Sbjct 279676 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 279735 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| || || ||||| || || | | | || | ||| || Sbjct 279736 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGAC 279795 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || |||||||| || || || || || ||||| Sbjct 279796 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCAT 279843 >seq3071 Length=285302 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||| ||| || || ||| ||||| || ||||| ||||| | | | | | || Sbjct 253168 CAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCCATC 253227 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| ||||| ||| ||||| | |||| || ||||| || Sbjct 253228 TTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTCCTTATC 253287 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | || ||||| | || ||||| | ||| || || Sbjct 253288 CTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGTGATGGT 253347 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||| ||||| | || || | |||||||||||| || Sbjct 253348 TTTCCCCGTAAGGGTCTTCATGAAAATCTGCATCCTG 253384 >seq686 Length=494244 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 |||||||| ||| ||||||| || | || ||||||| || || || || || |||| Sbjct 395360 GGATAAAAAATTCGTTCACAGATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAAC 395419 Query 9127 T-CTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGAT 9185 | || | | || | || |||||||| || || || || || || ||||| | || || Sbjct 395420 TTCTCTTTTCCAAAG-TTAAACAGCACAACACCAACATTTCCTCTATAATCTTTGTCTAT 395478 Query 9186 CACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCG 9245 ||||| || || || || ||||||||||| || || | ||||| | | || | || Sbjct 395479 GACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCATAGAGCTACTCT 395538 Query 9246 ACCGTAGCATCC 9257 |||||||| || Sbjct 395539 TCCGTAGCACCC 395550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380666360881629