Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4138 143 5e-29 seq519 120 6e-22 seq9705 95.1 2e-14 seq3167 84.2 4e-11 seq1657 84.2 4e-11 >seq4138 Length=267950 Score = 143 bits (158), Expect = 5e-29 Identities = 296/438 (68%), Gaps = 12/438 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || ||||||| ||||||||||||||||||||||| || || || || || || Sbjct 162586 CTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTC 162645 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||| | || || || | || | | | | | || | || |||||| Sbjct 162646 CATGAGGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCT---CCAGCAT 162702 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | |||| ||| | |||||||| | ||| |||||| |||||| || ||||| Sbjct 162703 AAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAG 162762 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| |||| |||| ||||||||||||| ||||| | ||| || | | || Sbjct 162763 ATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCA---CTGATGAT 162819 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | | || | | ||| || || |||| ||||||| || | | || |||||| Sbjct 162820 TTCTTGTACTCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGA---ACATCAGGCAGGC 162876 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||| | | | | || || || || | ||| || ||| ||||||| || || ||||| Sbjct 162877 AAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGG 162936 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | |||| | ||||||||||| |||| || |||||||||||||||||||| || Sbjct 162937 CATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCC 162996 Query 48256 CTCCACTGCCGCGAACGC 48273 || || || || || || Sbjct 162997 TTCTACAGCAGCAAAGGC 163014 >seq519 Length=432273 Score = 120 bits (132), Expect = 6e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || |||| Sbjct 279051 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGCTCCC 278992 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || | | ||| ||| | ||||| || ||||| |||| ||| ||| |||||| || | Sbjct 278991 GTAGGAGGCCCGCAGTACTCGACAGCCCCGCGTTCTCAGCCTTCAGCGTCTTCACCTTGT 278932 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557 |||| || ||||||||||| ||||| || ||| ||||| |||||||| Sbjct 278931 CCTCAAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGC 278883 >seq9705 Length=66704 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || || ||||||||||||||| |||||||||||||||||| ||| Sbjct 20438 GTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 20379 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 20378 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 20320 Query 213647 GGAC 213650 ||| Sbjct 20319 TGAC 20316 >seq3167 Length=233518 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 |||| |||| |||||| || |||| ||||| ||| || ||||||| || |||| | Sbjct 45203 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 45144 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | |||||||| || || || || || ||||||||||| | ||| ||||| || || || | Sbjct 45143 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 45084 Query 48273 C 48273 | Sbjct 45083 C 45083 >seq1657 Length=374802 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 215159 TTCACTTTTTCCTCTAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 215100 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 215099 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGAGACTCCATGTCG 215040 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 215039 ATGGGGGAC 215031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930852513240320