Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4138 116 7e-21 seq3167 93.3 8e-14 seq137 91.5 3e-13 >seq4138 Length=267950 Score = 116 bits (128), Expect = 7e-21 Identities = 298/450 (66%), Gaps = 32/450 (7%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||||||||| || || ||||| ||| || || ||||| | || |||||| Sbjct 163017 GTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGG 162958 Query 25945 CTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||||||||| || ||||| | Sbjct 162957 CTCAAGAA-ACGGGGACTGATGCCTGGCCT-TACATTTTCCAACGAGCTTATTAGCAGAG 162900 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | |||||| | | | | | |||||||||||| | | || | ||| || | ||||| | Sbjct 162899 ATGAGGGTTTACCCTGTGTCTTTGCCTGCCTGATGTTCA---GGCACCTGGTACACAAGC 162843 Query 26063 CTTC----TCAAGAGACCGTCTACA--GTATCATCAAAGAGGCTGTGGAGATCGAGAAGG 26116 | || |||||| |||| ||||||| || ||| | | ||| ||| Sbjct 162842 CGTCGGAGCCAAGAG------TACAAGAAATCATCA---GTGCAGTGAGGCTAGAGCAGG 162792 Query 26117 AGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCC 26176 |||||| | || |||||| || || |||| | Sbjct 162791 AGTTTCTCACGGAGGCCCTGCCTGTGAATCTCATCGGGATGAACTGCACCCTGATGAAGC 162732 Query 26177 AATACATTGAGTATGTGGCCGAC---CATCTGCTGTGCCAGCTGGGACTC-GCCAGACTC 26232 | ||||| || | ||| | ||| | | ||||| |||| || || || ||| | Sbjct 162731 AGTACATCGAATTCGTGCCGGACAGGCTTATGCTG---GAGCTAGGGTTCAGCAAGATTT 162675 Query 26233 T-ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 | | |||| || ||||| ||| | |||||||| || || || ||||||||||| || Sbjct 162674 TCAAAGTA--GAAAATCCGTTTGACCTCATGGAAAATATTTCATTAGAAGGGAAGACAAA 162617 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||| ||| | || ||||| ||||| Sbjct 162616 CTTCTTTGAGAAGCGAGTGGGCGAGTATCA 162587 >seq3167 Length=233518 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| ||| | || ||| || || ||||| || ||||||| Sbjct 45078 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 45137 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||||||| || ||||| || ||||| || ||||||||| Sbjct 45138 GGCTGAAGAAGAGAGGCCTCATGCCCGGACT-CACTTTCTCAAACGAACTGATCAGCAGG 45196 Query 26002 GACGA 26006 || || Sbjct 45197 GATGA 45201 >seq137 Length=869495 Score = 91.5 bits (100), Expect = 3e-13 Identities = 99/126 (79%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||||||||| || || ||||| ||| || || ||||| | || |||||| Sbjct 366708 GTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGG 366649 Query 25945 CTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||||||||| || ||||| | Sbjct 366648 CTCAAGAA-ACGGGGACTGATGCCTGGCCT-TACATTTTCCAACGAGCTTATTAGCAGAG 366591 Query 26003 ACGAGG 26008 | |||| Sbjct 366590 ATGAGG 366585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928166476253120