Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq12821 114 8e-20 seq661 104 2e-16 seq3071 96.9 2e-14 >seq12821 Length=31745 Score = 114 bits (126), Expect = 8e-20 Identities = 176/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 || ||||| |||||||||| | || || || ||| ||||| ||| | || || Sbjct 31182 GACTTGCAGCTGGTATTGATCTTGGCACCACCTACTCCTGTGTGAGTGTCTTCCAGCATA 31123 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || | ||| ||||||||||||||||| ||||| |||| |||||| | |||||| ||| Sbjct 31122 GGAAGGCAGAGATAATTGCCAATGACCAGGGTAACTGAACCACACCAACCTATGTTGCTT 31063 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| | |||| | ||||| ||| |||| || |||| | || || || Sbjct 31062 TTACTGACATGGAACGATTGATTGGGGATACTGCGAAGAATCAGGTTGTGATGAAACCCA 31003 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 ||| | |||||||||| ||| |||| || ||| ||||||||| | ||| | Sbjct 31002 CCAATGCAGTTTTTGATGCCAAATACCTGATCGGATGTAGGTTTGATGATGCTGTTGTAC 30943 Query 474564 AATCTGATATG 474574 | ||||| ||| Sbjct 30942 AGTCTGACATG 30932 >seq661 Length=456772 Score = 104 bits (114), Expect = 2e-16 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| | ||||||||| | || || || ||| ||||| | || | || |||| || Sbjct 104401 TGCAGTCGGTATTGATCTTGGCACCACCTACTCGTGTGTGGGAGTCTTCCAGCATGGGAA 104342 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || ||||||||||||||||| ||||| |||| |||||| ||||| ||||||| Sbjct 104341 GGTGGAGATAATTGCCAATGACCAGGGTAACCGAACCACACCAAGCTATGTGGCTTTTAC 104282 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 ||| || |||| | ||||| |||||||| || |||| | ||| Sbjct 104281 TGACACGGAACGATTGATTGGTGATGCTGCGAAGAATCAGGTTGC 104237 Score = 102 bits (112), Expect = 5e-16 Identities = 230/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543 || ||||| | ||||| |||||||| || ||||| | || || || || || | Sbjct 103212 AGGCGTCTGCGTACTGCCTGTGAACGGGCAAAGCGCACCCTCTCCTCCAGCACCCAGGCC 103153 Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603 | | |||| |||||||||| | ||| ||||| || | |||| ||||| | ||| Sbjct 103152 AGTATTGAGATTGATTCTCTCTATGAGGGAATCGACTTCTATACCTCCATTACCCGTGCT 103093 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 ||||||||| | | |||| || || | || | || || || ||| | | Sbjct 103092 CGATTTGAAGAATTAAATGCTGACCTGTTCCGGGGCACTCTGGACCCTGTAGAAAAGGCC 103033 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 || ||||| | ||||| ||||| || || ||||||| ||||| || || || ||||| Sbjct 103032 CTTCGAGATGCCAAACTAGACAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCT 102973 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTAAAAAGTTA 475780 || ||||| || || || |||| |||| || | | || ||||| ||| || | Sbjct 102972 ACCAGAATCCCCAAGATTC-AGAA--GCTTCTGCAGGACTTCTTCAATGGAAAAGAGCTG 102916 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || | || ||||||||||||||||| ||||| || Sbjct 102915 AACAAGAGCATCAACCCTGATGAAGCTGTTGCTTATGGTGC 102875 >seq3071 Length=285302 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || || ||||||||||||||||||||||| Sbjct 253225 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTCCTT 253284 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| |||||| ||| ||||| || | | || ||||| || || Sbjct 253285 ATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGTGAT 253344 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| | |||||| || Sbjct 253345 GGTTTTCCCCGTAAGGGTCTTCATGAAAATCTG 253377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265673154061604