Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq5147 398 9e-106 seq928 118 1e-21 seq3937 95.1 1e-14 >seq5147 Length=163313 Score = 398 bits (440), Expect = 9e-106 Identities = 682/985 (69%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| || |||| ||| || |||||| || ||| || ||||| || Sbjct 91748 CAGATGCTCATCCAAGCACTGGATGGCAAAGGGGTCAACATCAATGTCAAACTTATTGGC 91807 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| | ||||| || | || |||||| || ||| || | || || ||||| || Sbjct 91808 GAAGAAGTGGTGT---TTGCGAAGCATCCAGCTCAAGTCACCAGCTCCAAAAACGCACAC 91864 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | || || ||| |||| || ||||| |||| ||||| | || |||||||| Sbjct 91865 GGAGCGCACATGGACTCCGCTGCACGGTGGGTAAGGAGCACCTTTGGAAACATCACCTTC 91924 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || | || | ||||||||| ||| || || | Sbjct 91925 AAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCGGACAAGTCATACTTATG 91984 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | |||||| | ||| || || | || || | || | ||||||||| |||| | Sbjct 91985 GCTTGAGGGGAGAGA-ACCAGGGACTTCAGGGATCCTTTGGATGGTGGCCCAAAGGTACT 92043 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACC---TGTCCC 160407 | || ||||| |||||||||| | ||| |||||||||| | ||| || | || Sbjct 92044 CATCCGGGCTATACGTGTCCTGTGCCCACTCCATGAACTTTTGGATGCTCCCATTTTCTA 92103 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 ||| || | || || || | || |||||||| || ||||| ||||| | | Sbjct 92104 GCACAAAGCCT---ACATATTCCCTACTGACCACAAAGTAGGCACTGCCTGAGAAAAGAG 92160 Query 160468 GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 | | | | |||||| | ||||| || || ||||| | || | || | || | Sbjct 92161 GAGTTGTGAGGGGCGGCTGGGCTTTGGCCACCCCAGTGTTCGTCAGCTTCCCGTCGACAA 92220 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGAC 160587 | |||||||||||||||||| || ||||| || ||||| || || || || Sbjct 92221 CGGTGTGTCGCTTCTTCCACCTTTCCTCCTTGTTTGGAGGCATCTTCTCAGTTTCCAGGT 92280 Query 160588 TGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 |||| | || || || ||||| | | |||| || || ||||| || || | || | Sbjct 92281 TGTTTTCGCCCAGGAATGACTTCAGTTTCCTGACCATTTCCAGGTTGGTTTTAATAGGGA 92340 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 |||| ||||||| | ||| |||| ||||||||| || || |||| | || ||||||| Sbjct 92341 AGTCCATACCGCAAAGGTTGATCAAGTACTTCCAGTTTGCACTCATGCTGTACAGGTCCT 92400 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 ||||||| || | || ||||| || || |||||||| || || || |||||||| || | Sbjct 92401 TCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGGACGCATAAACGACGTTCTCCAGCT 92460 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 ||||||||||||||||| | || || ||| | || |||| |||||| || || Sbjct 92461 GGCTGGCCACAAAGACGTTCTTCAAGCAAGACGCAATGCCCATCACCGCGGCTAAAAAGG 92520 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || || ||| ||||||||| | |||||| | ||||||||| |||||||||| Sbjct 92521 GCTCCTCTGCTTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCCC 92580 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | |||||| | ||| || ||||| ||||| | ||| || || || || || |||| Sbjct 92581 TCAGGAGCCTCTCAAGCATTTCAATCTTGTGATGAACCACTATGGAATACGCAATGGGAA 92640 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | || |||||| ||| |||| | | | || || ||| || |||| ||| | Sbjct 92641 AGTCTACCTCCTCTTTACTAAGGGGCTCTACAATATATTTGCGCATCCTGATGAAAGAGG 92700 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||| || || |||||||| ||||| Sbjct 92701 CACAGTCACGGGTCATGTTTATATA 92725 >seq928 Length=282534 Score = 118 bits (130), Expect = 1e-21 Identities = 539/845 (64%), Gaps = 29/845 (3%) Strand=Plus/Minus Query 160207 GAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCT 160266 |||| |||| | || |||||||| ||||||| || || ||||||||||| | || | Sbjct 258158 GAGCATCTTTGGAAACATCACCTTCAAAGTACTGTCATTTGACAAACCTGGCGACAGCAT 258099 Query 160267 GCATGTCGGAGGTGTCGTATTTGTA-CATCAGGGGAACGGCACCGGGAACGCCGGGCATA 160325 |||||| || ||| || || | | | |||||| | ||| | || | || || Sbjct 258098 TCATGTCAGACAAGTCATACTTATGGCTTGAGGGGAGAGA-ACCAGAGACTTCAGGGATC 258040 Query 160326 CGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATG 160385 | || | ||||||||| |||| || || |||| || ||||||| | ||| |||||| Sbjct 258039 CTTTGGATGGTGGCCCAGAGGTACTCATCCAGGCTATATGTGTCCTATGCCCACTCCATG 257980 Query 160386 AACTCTCCG-ATTAACCTGTCCCGCAGAACGT-GAGTAACGTAGGATCTGGTC--ACGAC 160441 | | | ||| | | | | || || | | || || |||| | || || Sbjct 257979 AGATTTGGATATTCTCATTTTCT--AGCACATAGCCTA---TATATTCTGTACCGACTAC 257925 Query 160442 AAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGAC 160500 || || || ||||| || || | || | | | || || | || ||||| || | Sbjct 257924 AACTTAGGCACTGCCTGAAAAAAGAGGAGTTGTAAGTGGGGGTCCTG-CTTTGGCCACCC 257866 Query 160501 CGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT 160560 ||||| | || | || | || | | ||||| || |||||||| | ||| | Sbjct 257865 GAGTGTTTGTCAGCTTCCCATCAACAATGGTGTGTCATTTTTTCCACCTTTCTTCCTTAT 257806 Query 160561 GCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGA 160620 || |||| || || || || |||| | || || || || || | | ||| Sbjct 257805 TTGGAAGCATCTTCTCAGTTTCCAGGTTGTTTTCGCCCAAGAATGACTTGAGTTTCCTGA 257746 Query 160621 CGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCC 160680 | || || ||| | || || | || ||||| ||||||| | ||| |||| |||| ||| Sbjct 257745 CAATTTCCAGGCTGGTTTTAAAAGGGAAGTCCATACCGCAAAGGTTGATCAAGTACATCC 257686 Query 160681 ATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCC 160740 | || | |||| | || |||||| |||| || | | || ||||| | || |||| Sbjct 257685 AGTTTTCACTCATGCTGTATAGGTCCTTCATACAGATGAGGTCAGCCTGAAACCGACTCC 257626 Query 160741 AGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAA-------------GACGTTA 160787 |||| || || | ||||||||||| | ||||||||||| | Sbjct 257625 AGGAGGCATAAGCGACGTTCTCTAGCTGGCTGGCCACAAANNNNNNNNNNNNNNNNNNNA 257566 Query 160788 TCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCC 160847 || || || | || |||| |||||| || || || || || |||| || | Sbjct 257565 AAAAAGCAGGATGCAATGCCCATCACCGCGGCTAAAAAGGACTCGTCTGCTTTTCTGTTC 257506 Query 160848 ACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATC 160907 ||||| | |||||| | ||||||||| ||||||| ||| || | ||| || | ||| Sbjct 257505 ACGTGAATGCAATAGAAATTCTGAGGCATATAGATGG-CCTCAGGAGCCTGTCAAGCATT 257447 Query 160908 TCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTC 160967 || |||| ||||| | ||| || || || || || ||||| | |||||| ||| Sbjct 257446 TCATTCTTGTGATGAACCACTATGGAATACGCAATTGGAAAGCCTACCTCCTCTTTACTA 257387 Query 160968 AGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTG 161027 |||| | | | || || || | ||| | ||| | ||||||| || |||||||| Sbjct 257386 AGGGGCTCTACAATATATTTGTGCAT-TTG-TGAAAGAGGCACAATCACGGGTCATGTTT 257329 Query 161028 ATATA 161032 ||||| Sbjct 257328 ATATA 257324 >seq3937 Length=511643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| |||||| || |||||||||| ||| || ||||| | | ||||| | || Sbjct 379274 GGTGATGGTTCTGAAGTATCCAGTGCAGGTCCCCAGACCCATAAATACAGACAGCCCGCT 379215 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || || ||||| | ||| | || || | | | | ||| || || | || || Sbjct 379214 GGTGGACTCCTGAACAAGGTGTGTAAGGCGCCCCATCCTCGATGTCTCCCTCATGGTCCT 379155 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| | ||| || || || |||||| ||| ||| ||||| || || Sbjct 379154 GCCACTTGGTTAGCCTTGCAATAGCTCTCATGTCTGAGAGGTCAAATTTGGGGTGCAAGG 379095 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 || | | || || | | || |||||| ||||||||||| |||||||| || || | Sbjct 379094 GAGCTGATCCAGGCATCCAGGAGGCACGCTGGAGGGTGGCCCAAAGGTGTTCATCAGGAC 379035 Query 160360 TGTACGTGTCCTTAGACCATTCCAT 160384 |||| ||||| || | |||||| || Sbjct 379034 TGTAGGTGTCTTTTGCCCATTCGAT 379010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 235/356 (66%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 160619 GACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTT 160678 ||| ||||| || ||||||| |||||||| || || || ||| | | ||| || Sbjct 378778 GACCATCTCAGCATTGGTCTTGATGGGAAAGTCTGTCCCACAGGTGTTCAGGAGGTATTT 378719 Query 160679 CCATTTCGCGCTCAGGTC--GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGG 160736 |||| | || || || | | | ||| |||||| || | || |||||||| | | Sbjct 378718 CCATGGCACGG--AGCTCTGGAGTAAGTCTTCCATGCAGTTCAGGTCAGCCTGCACCCTG 378661 Query 160737 CTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACAC 160796 |||||||||||| || || | | || ||||| || | |||||| || ||| || Sbjct 378660 GACCAGGAAGCGTAGACCACTGACACCAGCTTACTAGCTATAAAGACATTTGGGAAGCAT 378601 Query 160797 GACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACG 160856 ||||| || || || ||| | ||| | | | ||| | |||||||| || Sbjct 378600 GACACAATGGCCCTGACTGCCTGCTTGAAAGTTTCTGGGGACTTCTGATCCACGTGGACA 378541 Query 160857 CAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTA 160916 || || | ||| ||||| | ||| | || | |||| ||| || || |||| ||||| Sbjct 378540 CAGTATATGTTTTGAGGGGTGTACACAGCGCGCAGCAGCCTTTCAAAGTTCTCGATCTTC 378481 Query 160917 TGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGA 160972 | ||| | ||| || || || || || || || |||| ||| || |||||| || Sbjct 378480 TCATGAACCACCATGGAATACGCAATGGGGAAGTCGGCCTCTTCTTTACTCAGCGA 378425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576797664033480