Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3071 105 1e-17 seq4728 87.8 4e-12 >seq3071 Length=285302 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| || || | |||| |||| || || ||||||||||| | | Sbjct 253198 GATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTT 253257 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || |||||||| ||||| || || || || ||||| ||||| Sbjct 253258 CTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGT 253317 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | |||||| || || || |||||||| || || | || || || || ||||| Sbjct 253318 GTCTGAGGGTTCTACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTG 253377 Query 192534 CAT 192536 ||| Sbjct 253378 CAT 253380 >seq4728 Length=151395 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||||||||||||||| || | ||||| |||||||| | | || ||| | Sbjct 107879 CATCTTCCAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCAGGAAGAAATCTTTCCT 107820 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||||||| ||||| | ||| | ||| ||||| || || | Sbjct 107819 TATCCTGGATATTGGCCTTTACATTTTCTATAGTGTTTGAGGGTTCAACTTCAAGTGTGA 107760 Query 192500 TGGTTTT-ACCAGTTAATGTTTTAAT-AAATATCTGCATTTT 192539 || |||| || || | || || || ||| |||||||| || Sbjct 107759 TGTTTTTCCCCCGTCAGGGTCTTCATAAAAAATCTGCATCTT 107718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983743072726050