Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1652 149 8e-30 seq2447 143 3e-28 seq4938 118 1e-20 seq28 105 8e-17 seq137 100 3e-15 seq5227 89.7 6e-12 >seq1652 Length=215532 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| |||||||| ||||| | |||||| | || Sbjct 121395 GCTTGGCCAGCTCCCCCGGCAGCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGA 121336 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 121335 TGGTTGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 121276 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 121275 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGT 121216 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 121215 GCACCTGCTTCAGCACCTTGTA 121194 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| |||||||| ||||| | |||||| | || Sbjct 121720 GCTTGGCCAGCTCCCCCGGCAGCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGA 121661 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 121660 TGGTTGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 121601 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 121600 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGT 121541 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 121540 GCACCTGCTTCAGCACCTTGTA 121519 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| |||||||| ||||| | |||||| | || Sbjct 126002 GCTTGGCCAGCTCCCCCGGCAGCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGA 126061 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 126062 TGGTTGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 126121 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 126122 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGT 126181 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 126182 GCACCTGCTTCAGCACCTTGTA 126203 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| |||||||| ||||| | |||||| | || Sbjct 126327 GCTTGGCCAGCTCCCCCGGCAGCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGA 126386 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 126387 TGGTTGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 126446 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 126447 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGT 126506 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 126507 GCACCTGCTTCAGCACCTTGTA 126528 >seq2447 Length=378355 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 144194 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 144253 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||||||||| || |||||| ||||||| |||| | Sbjct 144254 TGGTCGAGCGTTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 144313 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 144314 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGT 144373 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 144374 GGACCTGCTTCAGCACCTTGTA 144395 >seq4938 Length=141944 Score = 118 bits (130), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| ||||| ||| | |||||||||||| ||||||||||| || | ||| || Sbjct 67197 GCCAGCTCGCCCGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATAGTA 67256 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| || | ||| |||| || || ||| ||||||| | || ||||| Sbjct 67257 GAGCGCTTATTGTAATGCACCAGGCGCGAAGCTTCGCCTGCGATGCGTTTGAAGATGTCA 67316 Query 1254468 TTGACA--AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||| ||||||||||||| ||| | ||||| || ||||||| |||||| |||| Sbjct 67317 TTGACACAAACGAGTTCATGATGCCCATGGTCTTGTACGAAATGCCCATGTCGGGATGCA 67376 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| | ||| ||||| Sbjct 67377 CCTGCTTCAACACTTTGTA 67395 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| || | ||| || ||||| || | ||||| Sbjct 11480 CAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAACGCTTATTGTAATGCGC 11539 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 || ||| |||||| ||||||| |||| |||||||| || || |||||||||| Sbjct 11540 CAAGCGGGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATGAT 11599 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| || |||||| ||| || ||||| ||||| || |||||||| Sbjct 11600 GCCCATGGCTTTGGACGAAATGCCCGTGTCCGGATGCACTTGCTTAAGTACCTTGTA 11656 >seq28 Length=887731 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||||||||| || | || Sbjct 494595 GCTTGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 494654 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| || |||||| ||||||| |||| Sbjct 494655 TGGTCGAGCGCTTGTTGTAATGTGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGG 494714 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| | ||||| || ||||||| ||| | ||| |||||||| ||||||| Sbjct 494715 AGTCTGTCACAAAGGAATTCATGATGCTCATGGCCTTCGAAGAGATGCCAGTGTCGGGGA 494774 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 494775 GGACCTGCTTCAACACCTTGTAGATG 494800 >seq137 Length=869495 Score = 100 bits (110), Expect = 3e-15 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 869729 ACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCG 869788 || ||||| || || || || || |||||||||||||| ||||| || | ||||||| Sbjct 369143 ACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCG 369202 Query 869789 TCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAG 869848 | |||| ||||||| | || | ||||||||||||||| || |||||| Sbjct 369203 GGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCCTCAGCCGTCCAG 369262 Query 869849 ATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGG 869908 | ||||||||||| || |||||||||| ||| | | ||||| ||| || || | Sbjct 369263 AAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAAACC 369322 Query 869909 ACAAAGCGGTTGGGGTTGTC 869928 || |||||| ||| || || Sbjct 369323 ACGAAGCGGCGGGGATTTTC 369342 >seq5227 Length=134108 Score = 89.7 bits (98), Expect = 6e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 75281 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGAAGTGA 75340 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 75341 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 75400 Query 1254463 TGTCGTTGACAAAC 1254476 |||||||||| ||| Sbjct 75401 TGTCGTTGACGAAC 75414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102344735025091