Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3025 109 5e-19 seq22505 93.3 4e-14 seq5999 93.3 4e-14 seq1738 87.8 2e-12 >seq3025 Length=599017 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||| ||||| || || || || || || || || Sbjct 118138 ACAATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCC 118079 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| ||||| || || || || Sbjct 118078 AGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGAC 118019 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||||||| | | | |||| || || Sbjct 118018 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 117959 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || || || || || || ||| |||| |||| Sbjct 117958 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCG 117921 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24734 AAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATC 24793 || || || || || || || || ||| |||||| | || | || || |||||| Sbjct 115847 AAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATC 115788 Query 24794 CAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTG 24853 || ||||| ||||| || || || || || || | |||||||||| || || |||||| Sbjct 115787 CAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTG 115728 Query 24854 GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||| | | | |||| || || ||||| || || || || || || ||| |||| Sbjct 115727 GAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTC 115668 Query 24914 TTGCG 24918 |||| Sbjct 115667 CTGCG 115663 >seq22505 Length=6242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| ||||| || || || || || || | |||| |||||||| || Sbjct 3323 AAGATCCAAGACAAGGAAGGCATCCCACCTGACCATCAGAGGCTGATATTTGCCGGCAAG 3264 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | |||| ||||| ||||| || || || || || | ||| Sbjct 3263 CAGCTGGAGGATGGCCGGACCCTGTCCGATTACAACATCCAGAAAGAGTCCACTTTGCAC 3204 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| | || |||| |||||| Sbjct 3203 CTGGTGCTTCGTCTGCGTGGAGGC 3180 >seq5999 Length=119422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| ||||| || || || || || || | |||| |||||||| || Sbjct 2920 AAGATCCAAGACAAGGAAGGCATCCCACCTGACCATCAGAGGCTGATATTTGCCGGCAAG 2979 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | |||| ||||| ||||| || || || || || | ||| Sbjct 2980 CAGCTGGAGGATGGCCGGACCCTGTCCGATTACAACATCCAGAAAGAGTCCACTTTGCAC 3039 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| | || |||| |||||| Sbjct 3040 CTGGTGCTTCGTCTGCGTGGAGGC 3063 >seq1738 Length=291085 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || | || || || || || || || || || ||| Sbjct 19898 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 19957 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 19958 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 20017 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| ||||| || || |||||||||||| | | | |||| | || || Sbjct 20018 CAGAGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGTCTACAAT 20077 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || || || | ||| ||||| | || ||| || ||| Sbjct 20078 ATCCAAAAAGAGTCCACTTTGCACCTGGTGCTTCGCCTGCATGGTGGC 20125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449569045406440