Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2447 201 2e-45 seq1652 196 8e-44 seq4938 161 2e-33 seq28 150 3e-30 seq5227 145 1e-28 seq2940 109 9e-18 seq137 95.1 2e-13 >seq2447 Length=378355 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 144155 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 144214 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||| ||||| | Sbjct 144215 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGTTTGTTGTAGT 144274 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| || |||||||| |||||||||| Sbjct 144275 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATATCGTTGACGAACGAGTTCA 144334 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||||||||| |||||||| |||||||||| Sbjct 144335 TGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 144394 Query 1485710 AAAC 1485713 | || Sbjct 144395 ACAC 144398 Score = 86.0 bits (94), Expect = 1e-10 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485622 TCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACG 1485681 |||| ||||||||||| |||||||||||||| ||| | |||| ||||| || | Sbjct 268603 TCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCTTTGGAAGAGATACCGGTG 268544 Query 1485682 TCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 |||||||| |||||||| ||||||||||| || Sbjct 268543 TCGGGGTGGACCTGCTTCAGCACCTTGTACAC 268512 >seq1652 Length=215532 Score = 196 bits (216), Expect = 8e-44 Identities = 197/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| ||||||| || || ||| Sbjct 121434 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGCTCCCCCGGCA 121375 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 121374 GCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGATGGTTGAGCGCTTGTTGTAAT 121315 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| || |||||||| |||||||||| Sbjct 121314 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATATCGTTGACGAACGAGTTCA 121255 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| |||||||||||||||||| |||||||||| Sbjct 121254 TGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 121195 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 121194 ACACATAGATGGAGTA 121179 Score = 196 bits (216), Expect = 8e-44 Identities = 197/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| ||||||| || || ||| Sbjct 121759 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGCTCCCCCGGCA 121700 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 121699 GCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGATGGTTGAGCGCTTGTTGTAAT 121640 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| || |||||||| |||||||||| Sbjct 121639 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATATCGTTGACGAACGAGTTCA 121580 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| |||||||||||||||||| |||||||||| Sbjct 121579 TGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 121520 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 121519 ACACATAGATGGAGTA 121504 Score = 196 bits (216), Expect = 8e-44 Identities = 197/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| ||||||| || || ||| Sbjct 125963 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGCTCCCCCGGCA 126022 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 126023 GCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGATGGTTGAGCGCTTGTTGTAAT 126082 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| || |||||||| |||||||||| Sbjct 126083 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATATCGTTGACGAACGAGTTCA 126142 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| |||||||||||||||||| |||||||||| Sbjct 126143 TGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 126202 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 126203 ACACATAGATGGAGTA 126218 Score = 196 bits (216), Expect = 8e-44 Identities = 197/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| ||||||| || || ||| Sbjct 126288 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGCTCCCCCGGCA 126347 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 126348 GCAGCAGACGCACGGCCGTCTGTACCTCGCGGGACGTGATGGTTGAGCGCTTGTTGTAAT 126407 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| || ||||||| |||| || |||||||| |||||||||| Sbjct 126408 GCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATATCGTTGACGAACGAGTTCA 126467 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| |||||||||||||||||| |||||||||| Sbjct 126468 TGATGCCCATGGCCTTTGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 126527 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 126528 ACACATAGATGGAGTA 126543 >seq4938 Length=141944 Score = 161 bits (178), Expect = 2e-33 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| | |||| || || ||| Sbjct 11416 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGTTTAGCCAACTCCCCAGGCA 11475 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||| || Sbjct 11476 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAACGCTTATTGTAAT 11535 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| |||||| ||||||| |||| |||||||| || || ||||||| Sbjct 11536 GCGCCAAGCGGGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 11595 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| || |||||| ||| || ||||| ||||| || ||||||| Sbjct 11596 TGATGCCCATGGCTTTGGACGAAATGCCCGTGTCCGGATGCACTTGCTTAAGTACCTTGT 11655 Query 1485710 AAAC 1485713 | || Sbjct 11656 ACAC 11659 Score = 158 bits (174), Expect = 2e-32 Identities = 183/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || ||| | | ||||| ||||| ||| Sbjct 67153 TGTACTTGGTGACCGCCTTGGTGCCCTCCGACACAGCGCGTTTAGCCAGCTCGCCCGGCA 67212 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || |||||| || Sbjct 67213 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATAGTAGAGCGCTTATTGTAAT 67272 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG--ACAAACGAGTT 1485647 || ||||||| || ||| ||||||| | || ||||| ||| ||||||||||| Sbjct 67273 GCACCAGGCGCGAAGCTTCGCCTGCGATGCGTTTGAAGATGTCATTGACACAAACGAGTT 67332 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | |||| || ||||||| |||||| ||||||||||| | ||| || Sbjct 67333 CATGATGCCCATGGTCTTGTACGAAATGCCCATGTCGGGATGCACCTGCTTCAACACTTT 67392 Query 1485708 GTAAAC 1485713 ||| || Sbjct 67393 GTACAC 67398 >seq28 Length=887731 Score = 150 bits (166), Expect = 3e-30 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || | ||||||| ||||||| || || ||| Sbjct 494556 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACATGGCGTGCTTGGCCAGCTCCCCAGGCA 494615 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 494616 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 494675 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| |||||| ||||||| |||| ||| | ||||| || |||| Sbjct 494676 GTGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGGAGTCTGTCACAAAGGAATTCA 494735 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| ||||||| | |||||||| | |||||||| Sbjct 494736 TGATGCTCATGGCCTTCGAAGAGATGCCAGTGTCGGGGAGGACCTGCTTCAACACCTTGT 494795 Query 1485710 A 1485710 | Sbjct 494796 A 494796 >seq5227 Length=134108 Score = 145 bits (160), Expect = 1e-28 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 75242 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 75301 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 75302 GCAGCAGGCGCACGGCAGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAAT 75361 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1485642 |||||||||| |||||| ||||||| |||| ||||||||||| ||| Sbjct 75362 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAC 75414 >seq2940 Length=212193 Score = 109 bits (120), Expect = 9e-18 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 32921 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGAA 32862 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | |||||||||||| ||||||||||| |||| Sbjct 32861 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGG 32829 Score = 105 bits (116), Expect = 1e-16 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || || ||| Sbjct 59922 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCAGGCA 59863 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 | |||||||||||| ||||||||||| Sbjct 59862 GCAGCAGGCGCACGGCCGTCTGGATCTC 59835 Score = 87.8 bits (96), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 6685 TGTACTTAGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 6626 Query 1485530 TGATCAGGCGCACGGC 1485545 | |||||||||||| Sbjct 6625 GCAGCAGGCGCACGGC 6610 >seq137 Length=869495 Score = 95.1 bits (104), Expect = 2e-13 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 796187 CCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAA 796246 |||| || ||| || ||||| || || || || || || || |||||||| |||| Sbjct 369129 CCAGATTTTCATTGACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATAA 369188 Query 796247 AGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCT 796306 | || | ||||||| | |||| ||||||| | || | |||||| |||| Sbjct 369189 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 369248 Query 796307 CCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGC 796366 |||| || ||||| |||||||||||||| || |||||||||| ||| || ||||| Sbjct 369249 CCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATT 369308 Query 796367 GGATGGGGAACAGAACAAAGCG 796388 |||||| || | || ||||| Sbjct 369309 CGATGGGAAAAACCACGAAGCG 369330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910031679022697