Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2959 141 2e-28 seq22505 131 3e-25 seq5999 131 3e-25 seq5338 113 9e-20 seq248 111 3e-19 seq3071 107 4e-18 seq14192 100 6e-16 seq650 91.5 3e-13 seq4728 87.8 4e-12 seq2204 87.8 4e-12 >seq2959 Length=310600 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 279617 CCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 279676 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || ||||||||||| |||| || || || || || Sbjct 279677 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 279736 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || ||||| || ||||| || || || || || || || ||| | || || || Sbjct 279737 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACC 279796 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| ||||| ||||| || || || |||||| Sbjct 279797 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATT 279844 >seq22505 Length=6242 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || ||| || || | ||||| ||| || |||||||| || || ||||| || Sbjct 3181 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3240 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || || ||||| || || || || || || || || Sbjct 3241 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 3300 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || | ||| | || |||||| | || | || Sbjct 3301 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 3360 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| ||| ||||| |||||||||||||| Sbjct 3361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 3407 >seq5999 Length=119422 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || ||| || || | ||||| ||| || |||||||| || || ||||| || Sbjct 3062 CCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGAC 3003 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || || ||||| || || || || || || || || Sbjct 3002 AGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 2943 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || | ||| | || |||||| | || | || Sbjct 2942 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACC 2883 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| ||| ||||| |||||||||||||| Sbjct 2882 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCAT 2836 >seq5338 Length=92157 Score = 113 bits (124), Expect = 9e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 |||||| || || |||||||| || || |||||||| ||| | | || ||||| || || Sbjct 52166 GTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTG 52225 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| |||| || || || || || || || || ||||| || ||||| Sbjct 52226 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTT 52285 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || || || || ||| | || | || |||| || || || |||| || Sbjct 52286 GGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTGCTGGT 52345 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 || ||||| | || || |||||| Sbjct 52346 CAGGGTCTTCATGAAGATTTGCATT 52370 >seq248 Length=567972 Score = 111 bits (122), Expect = 3e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| || || | |||||| || || ||||||| ||||| ||||| || Sbjct 1456 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAG 1515 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | | | ||||| || || || ||||||||||| || ||| |||| || ||| Sbjct 1516 AGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAG---TTGCTGATGGGGGGGT 1572 Query 82704 ---ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || || || || | ||||| | || ||||| || || || ||| | || || Sbjct 1573 GGAATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCC 1632 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || |||| || || |||||||| || | ||||| || || || |||||| Sbjct 1633 ACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATT 1683 >seq3071 Length=285302 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || || || || || || ||||| | | | || ||||| || || || |||||| Sbjct 253187 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTGCCAGCA 253246 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || | || ||||| ||||| |||||||||||||| || ||||| || || ||| Sbjct 253247 AAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACA 253306 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 ||||| || || || |||||||| || | || || || || || || | ||||| Sbjct 253307 TTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTC 253366 Query 82797 ACAAATATCTGCAT 82810 | || |||||||| Sbjct 253367 ATGAAAATCTGCAT 253380 >seq14192 Length=18816 Score = 100 bits (110), Expect = 6e-16 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | ||||| || || |||||||| || || || ||||| || | | | ||| Sbjct 10469 AGAACCAGGTGCAAGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCT 10528 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT--ATTCCTTCCTTAT 82716 || | || || |||||||||||| || || || || || || || || | || | Sbjct 10529 TCCAACTGCTTGCCAGCAAAGATTTC-CTCTGCTGGTCAGGGGGGGAATGCCCTTTTTGT 10587 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 | ||||||||||| || || || ||||| | || | ||||| || |||| || || | Sbjct 10588 CATGAATCTTTGCCTTGACCTTCTCAATGATGTCTCTGGGTTCAACCTCCAGGGTAATGG 10647 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||| |||| | ||| |||||||| Sbjct 10648 TCTTGCCTGTCAGGGTCTGCATAAAGATCTGCAT 10681 >seq650 Length=610773 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || | || ||||| | | | | || ||||| || || Sbjct 359095 TGAAGGGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 359154 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || ||||| ||||| |||||||||||||| || ||||| Sbjct 359155 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 359214 Query 82728 GCTTTTACATTTT 82740 || || ||||||| Sbjct 359215 GCCTTGACATTTT 359227 >seq4728 Length=151395 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| |||||||| |||||||| || || || || ||||| ||| | | || |||| Sbjct 107880 CCATCTTCCAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCAGGAAGAAATCTTTCC 107821 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || || || || ||||||||||| || || | ||||| ||||| | || Sbjct 107820 TTATCCTGGATATTGGCCTTTACATTTTCTATAGTGTTTGAGGGTTCAACTTCAAGTGTG 107761 Query 82773 ATCGTCTT-GCCTGTCAACGTCTTTA-CAAATATCTGCAT 82810 || | || || |||| ||||| | ||| |||||||| Sbjct 107760 ATGTTTTTCCCCCGTCAGGGTCTTCATAAAAAATCTGCAT 107721 >seq2204 Length=328412 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||||| | |||| ||||| | || || | ||||| ||||||||||| Sbjct 213378 GCCTTATGGTGGTACTTTGTATCAAAAGGAGTGGAGTATCTGGATACCGTGTTTTTCATC 213319 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || || |||||| ||| | ||||| || ||||| | || ||||| Sbjct 213318 CTGAGGAAGAAAAACAACCAGGTTTCTTTCCTTCACGTGTACCATCACTGCACAATGTTC 213259 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || | | ||| | || ||||| ||| | || || || |||| Sbjct 213258 ACACTGTGGTGGATCGGAATTAAGTGGGTGGCAGGCGGCCAAG 213216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981092258465397