Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq5147 259 6e-64 seq7195 95.1 1e-14 >seq5147 Length=163313 Score = 259 bits (286), Expect = 6e-64 Identities = 590/883 (67%), Gaps = 10/883 (1%) Strand=Plus/Plus Query 162172 TCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGG 162231 || || | ||| || ||||||||||| ||||| || || ||||||||||| || || | Sbjct 91842 TCACCAGCTCCAAAAACGCACACGGAGCGCACATGGACTCCGCTGCACGGTGGGTAAGGA 91901 Query 162232 GCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGC 162291 || || | | ||||| || || |||| |||||||| || ||||||| || ||| | | Sbjct 91902 GCACCTTTGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTC 91961 Query 162292 ATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTC 162351 |||||||| ||| ||||| | ||| || | | ||||| || | || | || Sbjct 91962 ATGTCGGACAAGTCATACTTATGGCTTGAGGGGAGAGAACCAGGGACTTCAGGGATCCTT 92021 Query 162352 TGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAAC 162411 || | || ||||| |||| || || || |||||||| |||| | ||||||||||||| Sbjct 92022 TGGATGGTGGCCCAAAGGTACTCATCCGGGCTATACGTGTCCTGTGCCCACTCCATGAAC 92081 Query 162412 TCCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTAC 162471 | || | || | ||| | | || || ||| | || | |||||| Sbjct 92082 TTTTGGATGCTCCCATTTTCTAGCACAAAGCCTACATATTCCCTACTGACCACAAAGTAG 92141 Query 162472 GCGCTACC--AGAAAACACGGGTATGCGTATAGGAGGGGGCT---CTTTGTCTTGACCCG 162526 || || || |||||| | | || || | ||| || |||| ||||| | || | Sbjct 92142 GCACTGCCTGAGAAAAGAGGAGT-TGTG---AGG-GGCGGCTGGGCTTTGGCCACCCCAG 92196 Query 162527 TGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGG 162586 |||| | | | || || || || ||||| |||| ||||||| || ||| | | Sbjct 92197 TGTTCGTCAGCTTCCCGTCGACAACGGTGTGTCGCTTCTTCCACCTTTCCTCCTTGTTTG 92256 Query 162587 TAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCA 162646 || | | || || || || |||| ||| || | |||||| | | |||| Sbjct 92257 GAGGCATCTTCTCAGTTTCCAGGTTGTTTTCGCCCAGGAATGACTTCAGTTTCCTGACCA 92316 Query 162647 TCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACT 162706 | || || ||||| |||| || ||||| | ||||| || || || | || ||||| | Sbjct 92317 TTTCCAGGTTGGTTTTAATAGGGAAGTCCATACCGCAAAGGTTGATCAAGTACTTCCAGT 92376 Query 162707 TAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACG 162766 | | || | | |||||| |||| | ||||| || || ||||| || |||||||| | Sbjct 92377 TTGCACTCATGCTGTACAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGG 92436 Query 162767 ACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTA 162826 |||| || |||||| |||||| | |||| |||||||| || | || || || | | Sbjct 92437 ACGCATAAACGACGTTCTCCAGCTGGCTGGCCACAAAGACGTTCTTCAAGCAAGACGCAA 92496 Query 162827 TCCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886 | |||||||| || | | || | || ||||| | || ||||| | ||| || | Sbjct 92497 TGCCCATCACCGCGGCTAAAAAGGGCTCCTCTGCTTTTTTGTCCACGTGAATGCAATAGA 92556 Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946 ||||||||| |||||||||||||| | ||||| | ||| || ||||| || || | Sbjct 92557 AATTCTGAGGCATATAGATGGCCCTCAGGAGCCTCTCAAGCATTTCAATCTTGTGATGAA 92616 Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGT 163006 |||| || |||||||| ||||| || || ||||||| ||| || | | || || | Sbjct 92617 CCACTATGGAATACGCAATGGGAAAGTCTACCTCCTCTTTACTAAGGGGCTCTACAATAT 92676 Query 163007 ACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | ||||| ||| | || | |||||||| |||||||| Sbjct 92677 ATTTGCGCATCCTGATGAAAGAGGCACAGTCACGGGTCATGTT 92719 >seq7195 Length=137916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 || || |||| || ||| || | |||||||||||||| | || || ||| | || || Sbjct 41541 ACTGTGCCCAGGTATAAAACCTGGCATATCACCTCCT---TCCCAACCTGATTCTTGGGG 41597 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TTT 171641 ||||| || | |||||||| || ||||| || ||||| || || || || | | | Sbjct 41598 TCTTTGACCCGGAGAATGCTGGTGACAGACGTGGTCCCATTT-GA-GTGCAAGTGACTCT 41655 Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701 ||||||||| || ||||| | || | || ||||| || |||| ||||| | | Sbjct 41656 CAGTACTATTCTCAATTCCTGTCCCAGTGACCTTCCAGGCGATGGCAGGGGCTGGGCGGG 41715 Query 171702 CAGTAGCAGAGCAAGTTATGTTTA 171725 |||| ||||||||||| ||||||| Sbjct 41716 CAGTCGCAGAGCAAGTGATGTTTA 41739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578009578340800