Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2959 84.2 2e-11 seq248 82.4 7e-11 >seq2959 Length=310600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 25159 TTTTCAATTAAA---CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCAC 25215 |||| |||| || ||| |||||| | || || || || || || || || | ||||| Sbjct 279862 TTTTAAATTCAAGGTCAAAATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCAC 279803 Query 25216 GATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGA 25275 | || ||||| ||| || || |||||| | || || || || |||||||| Sbjct 279802 CCTGGAGGTCGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGA 279743 Query 25276 GGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG 25335 ||| || || ||||| ||||| ||||||| | | ||||| || || ||||||| | Sbjct 279742 GGGCATCCCCCCCGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCG 279683 Query 25336 AAATGTCAGCGATTACAATATTCAAAAAGAATCCACC 25372 | | | |||||||| || || ||||| |||||| Sbjct 279682 CACTCTTTCTGATTACAACATCCAGAAAGAGTCCACC 279646 >seq248 Length=567972 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/205 (69%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || || || || ||||||| || | ||||| | || || || | Sbjct 1686 CAAAATGCAAATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCC 1627 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTAT---ACCGCC 25287 || || || |||||| | || || || || || |||||||| || ||| || Sbjct 1626 CAGTGACACCATCGAGAATGTGAAGGTGAAGATCCTGGACAAAGAGGGCATTCCACCCCC 1567 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 | |||||||| ||||| | | ||||| || || ||||||||| | | | || ||| Sbjct 1566 CCATCAGCAA---CTCATCTTTGCTGGCAAGCAGCTGGAAGATGATTGCACTCTCTCCGA 1510 Query 25348 TTACAATATTCAAAAAGAATCCACC 25372 ||||||||| | ||||| |||||| Sbjct 1509 TTACAATATCTAGAAAGAGTCCACC 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444769353123360