Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq7195 205 1e-47 seq19747 145 9e-30 seq24782 136 5e-27 seq4729 127 2e-24 seq8982 87.8 2e-12 seq27295 86.0 7e-12 seq13353 86.0 7e-12 seq3459 86.0 7e-12 >seq7195 Length=137916 Score = 205 bits (226), Expect = 1e-47 Identities = 239/320 (75%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| ||||| ||||| ||||||| |||| || || ||| | | ||| || ||| Sbjct 44063 GTGGTGACGCAGGACGAGAGAAAGCTGCTGCACACACCTGCATCCTTAAGATGTTCTCTG 44004 Query 171132 CAGACT-TCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGA 171190 | ||| || ||||| ||||||| || |||||||||| || | | ||||| Sbjct 44003 AA-ACTATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGA 43945 Query 171191 GAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAA 171250 |||||| | |||| ||||||| ||| || || || |||||||| || |||| |||| Sbjct 43944 AAACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTCCAGCCTGCATATAGAGACAG 43885 Query 171251 GATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTT 171310 | |||||||||| |||| |||||| ||| ||| |||||| || ||||| || ||| | Sbjct 43884 GGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACCCT 43825 Query 171311 AGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGG 171370 || || ||||| ||||||| || ||||| || || |||| |||||||| ||||| || Sbjct 43824 GGACGATGAGGGCTGCTACATGTGTCTCTTCAATACATTTGTTTCTGGGAAGATCTCAGG 43765 Query 171371 GGTGGCCTGCCTCACCCTCT 171390 | |||||||||||||||| Sbjct 43764 GACAGCCTGCCTCACCCTCT 43745 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| |||||||| || Sbjct 41785 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 41726 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || |||||| | | ||| ||| |||||| Sbjct 41725 TCTGCGACTGCCCGCCCAGCCCCTGCCATCGCCTGGAAGGTCACTGGGACAGGAATTGAG 41666 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| || | || || ||||| || || ||||| ||||| | |||| Sbjct 41665 AATAGTACTGAGAGTCACTTGCACTCAAATGGGACCACGTCTGTCACCAGCATTCTCCGG 41606 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGG 171631 || ||||||||||||| |||| | || |||||||| || ||||| || | ||||||| Sbjct 41605 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAGGTGATATGCCAGGTTTTATACCTGGG 41547 >seq19747 Length=23491 Score = 145 bits (160), Expect = 9e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| |||| || | ||| || | ||||||||||||||| || |||||||| |||||||| Sbjct 2811 CTTTAGGCTTGTGATGTGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAA 2752 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||| || || ||||||||||| |||||||| || |||||||| | Sbjct 2751 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 2692 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || || || || || ||| ||||| || ||||| ||||| Sbjct 2691 AGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 2647 >seq24782 Length=13686 Score = 136 bits (150), Expect = 5e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 3259 CTTTAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAA 3200 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||| || || || ||||||||||| |||||||| || |||||||| | Sbjct 3199 GGGCACGCCCAGGCCAATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 3140 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 | || || || || || ||| |||| || ||||| ||||| ||| || || | Sbjct 3139 CACTACATAGAATTGACAGAGGGCAAGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTGA 3080 Query 147162 GGGGT 147166 ||||| Sbjct 3079 GGGGT 3075 >seq4729 Length=178566 Score = 127 bits (140), Expect = 2e-24 Identities = 127/167 (76%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||||||| Sbjct 55102 AGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGA 55043 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | |||| Sbjct 55042 TGCCCCAGGCAGAGAACCA------------TGGCCCAGAAATCAAGGAGCATTTGAACT 54995 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || | ||||| ||| ||| Sbjct 54994 CCCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 54948 >seq8982 Length=65546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| | || |||||| | ||||||| || || ||||| Sbjct 14594 GTATTCCCTGGTGTTCATCATTGGCGTTATAGGCAATATCTTGGTGATTCTGGTTCTCAT 14653 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| ||| || | | |||||||| ||||| ||| |||||||||||| | ||| Sbjct 14654 GCAGTACAGGAGACTTCGAAGCATGACCAGCATCTACCTATTCAACCTGGCCATCTCTGA 14713 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||| ||| | || || |||||| ||| Sbjct 14714 TCTGGTCTTCCTTTCCACTTTGCCTTTCTGGATTGACT 14751 >seq27295 Length=6846 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| |||||||| || || || | || Sbjct 437 GCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GCGC 495 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | ||||| || ||||||| | ||| |||||||| | |||||| Sbjct 496 AGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCC 555 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| || || |||| | ||||| ||| Sbjct 556 TTTGGAGGACAGTTCTTTAGCATTTGTGGATCCC 589 >seq13353 Length=41068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| |||||||| || || || | || Sbjct 39491 GCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GCGC 39433 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | ||||| || ||||||| | ||| |||||||| | |||||| Sbjct 39432 AGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCC 39373 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| || || |||| | ||||| ||| Sbjct 39372 TTTGGAGGACAGTTCTTTAGCATTTGTGGATCCC 39339 >seq3459 Length=157832 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| ||||| |||| |||| |||||||||||| |||||||| Sbjct 118696 TGGACCTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGCTGTGTCAACCCAA 118637 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || ||||| ||||| | ||||| Sbjct 118636 TCATCTATGCCTTTGTTGGCGAGAGGTTCC 118607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583061886007200