Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2447 161 1e-33 seq1652 158 2e-32 seq5227 122 1e-21 seq28 122 1e-21 seq4938 113 6e-19 seq137 91.5 2e-12 >seq2447 Length=378355 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 144395 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCTTCCAAGGCCATG 144342 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| |||||| ||| Sbjct 144341 GGCATCATGAACTCGTTCGTCAACGATATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 144282 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||| ||| || ||| | || ||||||||||| ||||||||| Sbjct 144281 CTGGCGCACTACAACAAACGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 144222 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 144221 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 144173 >seq1652 Length=215532 Score = 158 bits (174), Expect = 2e-32 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || ||| ||||| Sbjct 121194 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCAAAGGCCATG 121247 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| || ||||||| ||| Sbjct 121248 GGCATCATGAACTCGTTCGTCAACGATATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 121307 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 121308 CTGGCGCATTACAACAAGCGCTCAACCATCACGTCCCGCGAGGTACAGACGGCCGTGCGT 121367 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| ||| || || ||||||||||||| Sbjct 121368 CTGCTGCTGCCGGGGGAGCTGGCCAAGCATGCTGTGTCCGAGGGCACCA 121416 Score = 158 bits (174), Expect = 2e-32 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || ||| ||||| Sbjct 121519 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCAAAGGCCATG 121572 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| || ||||||| ||| Sbjct 121573 GGCATCATGAACTCGTTCGTCAACGATATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 121632 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 121633 CTGGCGCATTACAACAAGCGCTCAACCATCACGTCCCGCGAGGTACAGACGGCCGTGCGT 121692 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| ||| || || ||||||||||||| Sbjct 121693 CTGCTGCTGCCGGGGGAGCTGGCCAAGCATGCTGTGTCCGAGGGCACCA 121741 Score = 158 bits (174), Expect = 2e-32 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || ||| ||||| Sbjct 126203 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCAAAGGCCATG 126150 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| || ||||||| ||| Sbjct 126149 GGCATCATGAACTCGTTCGTCAACGATATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 126090 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 126089 CTGGCGCATTACAACAAGCGCTCAACCATCACGTCCCGCGAGGTACAGACGGCCGTGCGT 126030 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| ||| || || ||||||||||||| Sbjct 126029 CTGCTGCTGCCGGGGGAGCTGGCCAAGCATGCTGTGTCCGAGGGCACCA 125981 Score = 158 bits (174), Expect = 2e-32 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || ||| ||||| Sbjct 126528 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCAAAGGCCATG 126475 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| || ||||||| ||| Sbjct 126474 GGCATCATGAACTCGTTCGTCAACGATATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 126415 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 126414 CTGGCGCATTACAACAAGCGCTCAACCATCACGTCCCGCGAGGTACAGACGGCCGTGCGT 126355 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || ||||||| ||| || || ||||||||||||| Sbjct 126354 CTGCTGCTGCCGGGGGAGCTGGCCAAGCATGCTGTGTCCGAGGGCACCA 126306 >seq5227 Length=134108 Score = 122 bits (134), Expect = 1e-21 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 ||| ||||||||||| |||| ||||||| |||||| |||||||||| | ||| Sbjct 75414 GTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGCCTGGCGCATTACAA 75355 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 ||||||| || ||| | || ||||||||||| |||||||||||| | ||| ||| Sbjct 75354 CAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACTGCCGTGCGCCTGCTGCTGCCCGG 75295 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||||| ||||||||| || |||||||||| Sbjct 75294 GGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 75260 >seq28 Length=887731 Score = 122 bits (134), Expect = 1e-21 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| | |||| || ||| |||| || ||| || Sbjct 494799 ATCTACAAGGTGTTGAAGCAGGTCCTCCCCGACAC---TGG--CATC-TCTTCGAAGGCC 494746 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || ||||| | ||| |||| ||||||| |||||| Sbjct 494745 ATGAGCATCATGAATTCCTTTGTGACAGACTCCTTCGAGCGCATCGCTGGCGAGGCGTCG 494686 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | | |||||||||| || ||| | || ||||||||||| |||||| Sbjct 494685 CGCCTGGCACATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 494626 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| || || ||||||| ||||||| | ||||||||||||| Sbjct 494625 CGCCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCCATGTCCGAGGGCACCA 494574 >seq4938 Length=141944 Score = 113 bits (124), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||| | ||||||||||| ||| | ||||| | || ||||| ||||| Sbjct 67395 TACAAAGTGTTGAAGCAGGTGCATCCCGACA----TGGGCATT--TCGTACAAGACCATG 67342 Query 724974 TCGATCATGAACTCGTTTGT--CAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||||||||||||||||| ||| ||||| || | ||||||| ||| || | Sbjct 67341 GGCATCATGAACTCGTTTGTGTCAATGACATCTTCAAACGCATCGCAGGCGAAGCTTCGC 67282 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 |||||| || | ||| |||||| || ||| | || ||||||||||| ||||||| Sbjct 67281 GCCTGGTGCATTACAATAAGCGCTCTACTATCACGTCCCGGGAGATCCAGACGGCCGTGC 67222 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||||| ||||| | | ||| || || |||||||||| Sbjct 67221 GCCTGCTGCTGCCGGGCGAGCTGGCTAAACGCGCTGTGTCGGAGGGCACCA 67171 Score = 107 bits (118), Expect = 3e-17 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || ||||| ||||| || || || || || ||||| || ||||| Sbjct 11656 TACAAGGTACTTAAGCAAGTGCATCCG-GACACG--GGCATTTCGTCCAA--AG-CCATG 11603 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| |||||| ||| Sbjct 11602 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCAGGCGAGGCTTCCCGC 11543 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | ||| ||||| || ||| | || ||||||||||| ||||||||| Sbjct 11542 TTGGCGCATTACAATAAGCGTTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 11483 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || |||| | |||||||| || |||||||||| Sbjct 11482 CTGCTGCTGCCTGGGGAGTTGGCTAAACACGCCGTGTCGGAGGGCACCA 11434 >seq137 Length=869495 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| | ||| | || || || |||||| || | || |||||| ||||| Sbjct 369357 GAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCGTGGTTTTTCCCATCGAATACCATGAT 369298 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||||| | |||| ||||||||||||| ||||| || |||||||| ||||| Sbjct 369297 ATCTGGCAGATGTACAAGAAAG-CCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCT 369239 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | | || | ||||||| |||||| ||||||| | ||||| || || Sbjct 369238 CTCCAAGGATATTCAACACTGGGAAGCGCTGAAACCCGACGAGAGACATTTTATATCTCA 369179 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 |||||| | |||| || || || || |||||||| || Sbjct 369178 CGTCCT-GGCTTTCTTTGCGGCGAGTGATGGCATAGT 369143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172176194268526