Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3025 123 2e-23 seq3071 120 3e-22 seq1738 109 5e-19 seq22505 104 2e-17 seq5999 104 2e-17 seq2959 102 7e-17 seq650 102 7e-17 seq5338 95.1 1e-14 seq5954 87.8 2e-12 seq248 87.8 2e-12 seq8984 82.4 7e-11 >seq3025 Length=599017 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 117944 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 118003 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 118004 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 118063 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || ||||| || || |||||||| Sbjct 118064 CTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCAC 118123 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 118124 GAAGATCTGCATT 118136 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 115686 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 115745 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 115746 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 115805 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | | |||||||| | || ||||||| ||||| || || Sbjct 115806 CTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTT 115847 >seq3071 Length=285302 Score = 120 bits (132), Expect = 3e-22 Identities = 174/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 35512 ACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAA 35571 |||||| | |||||||||| ||| | | ||||||||| |||||||| || | ||| Sbjct 253156 ACCACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAA 253215 Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631 || | | || ||||||||||| || ||||| |||| | |||||| || | ||||| Sbjct 253216 AGTATGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAAT 253275 Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691 | ||||| ||| |||||| ||| | | || | | ||||| | ||| ||||| Sbjct 253276 TCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTC 253335 Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCGCACACAC 35751 | |||||| ||||| ||||| | || |||| || |||||||| ||| |||| | Sbjct 253336 AAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCATCCTGGCGGCACTGCC 253395 Query 35752 ACCACA 35757 |||||| Sbjct 253396 ACCACA 253401 >seq1738 Length=291085 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || || || ||| ||||| || ||||| ||| || ||| || | || || Sbjct 20107 CACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCCTC 20048 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || |||||||||| || ||||||||| | || | || |||||||| Sbjct 20047 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 19988 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | ||||| || | || ||||| | ||||| || || Sbjct 19987 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 19928 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| ||| || |||||||| |||||||| Sbjct 19927 GCCCATCAGGGTCTTCACAAAGATCTGCAT 19898 >seq22505 Length=6242 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || || || ||| || || ||||||||||||| || ||| || | || || Sbjct 3198 CACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTC 3257 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || |||||||||| || ||| ||||| | || | || |||||||| Sbjct 3258 CAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTG 3317 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | || || || | | ||||| | ||||| || || Sbjct 3318 GATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCTT 3377 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| ||| || ||||||||||||||||| Sbjct 3378 GCCCATCAGGGTCTTCACAAATATCTGCAT 3407 >seq5999 Length=119422 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || || || ||| || || ||||||||||||| || ||| || | || || Sbjct 3045 CACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTC 2986 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || |||||||||| || ||| ||||| | || | || |||||||| Sbjct 2985 CAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTG 2926 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | || || || | | ||||| | ||||| || || Sbjct 2925 GATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCTT 2866 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| ||| || ||||||||||||||||| Sbjct 2865 GCCCATCAGGGTCTTCACAAATATCTGCAT 2836 >seq2959 Length=310600 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 279652 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 279711 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || ||| || ||| |||||| ||||| | Sbjct 279712 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTT 279771 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || |||||||| || ||||| Sbjct 279772 CTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCAC 279831 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 279832 GAAGATTTGCATTTTG 279847 >seq650 Length=610773 Score = 102 bits (112), Expect = 7e-17 Identities = 166/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||||| ||| | || ||||||||| ||| |||| || | | Sbjct 359071 CCACCATGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGCTGTAGTCAGAC 359130 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||||| |||| || |||||| || | |||| Sbjct 359131 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 359190 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT-----TGCCA--CCGTGTCGCTCGA 35682 | | ||||| ||| |||||| ||| | | | || || ||||| | Sbjct 359191 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTTTCTGTCATTTAGTGTCCGAGGG 359250 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||| |||| | | |||| ||||| ||||| | || ||||| || |||||||| ||| Sbjct 359251 TTCAACCTTGAGCATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCCTG 359308 >seq5338 Length=92157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 52178 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 52237 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || ||| || ||| |||||| ||||| | Sbjct 52238 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTT 52297 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| |||| ||||||||| ||||| ||||| | |||| || |||| Sbjct 52298 CTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTGCTGGTCAGGGTCTTCAT 52357 Query 35725 AAATATCTGCATTCTGT 35741 || || |||||| ||| Sbjct 52358 GAAGATTTGCATTTTGT 52374 >seq5954 Length=158713 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||||| || | || ||||| ||| |||||||| || | | Sbjct 21678 CCACCACGAAGTCTCAACACCAGATAAAGGGTGGACTCCTCTTGGATGTTGTAGTCAGGC 21619 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||||||||| || | || |||| || |||| | || | || | Sbjct 21618 AAAGTACAGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCAGATCAGGAGAA 21559 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||| ||| |||||| ||| | | || | | ||||| | || ||| Sbjct 21558 ATTCCTCCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTAAGGGCTCAACC 21499 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | |||||| ||||| || | | || ||||| || |||||||| ||| Sbjct 21498 TCGAGCGTGATGGTTTTCCCTGGAAGGGTCTTCACGAAAATCTGCATCCTG 21448 >seq248 Length=567972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 35555 ATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGC 35614 || |||||||||| | || | || || ||||||||||| || ||||| || | || Sbjct 1501 ATATTGTAATCGGAGAGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGC 1560 Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTG 35674 || ||| | |||| || ||| ||||||| |||||| ||||| | | | | ||| Sbjct 1561 TGATGGGGGGGTGGAATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTG 1620 Query 35675 TCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC 35734 || || | |||||||||| ||||| || || || || | || ||||| || || ||| Sbjct 1621 TCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGC 1680 Query 35735 ATTCTG 35740 ||| || Sbjct 1681 ATTTTG 1686 >seq8984 Length=72256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 54588 CTCTTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAA 54529 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| || ||||||||| | || | || |||||||| |||||| Sbjct 54528 TATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTT 54481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450464391068840