Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3025 123 3e-23 seq3071 104 2e-17 seq2959 96.9 4e-15 seq5338 93.3 4e-14 >seq3025 Length=599017 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| || || || |||||||||||| Sbjct 117909 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 117968 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | |||||| || || || Sbjct 117969 AGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 118028 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 118029 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACC 118088 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| ||||| ||||| ||||| ||||| || |||||| Sbjct 118089 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 118136 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| || || || |||||||||||| Sbjct 115651 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 115710 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | |||||| || || || Sbjct 115711 AGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 115770 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 115771 ATGCCTTCCTTGTCCTGGATCTT 115793 >seq3071 Length=285302 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || |||| |||||||| ||||||||||| | ||| || || Sbjct 253163 AGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTATG 253221 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| |||| ||||||||| || || || ||||| Sbjct 253222 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTC 253281 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | ||||| || | ||| || || || || Sbjct 253282 CTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGT 253341 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | || || | |||||| ||||| Sbjct 253342 GATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 253380 >seq2959 Length=310600 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| || || || |||||||| || | Sbjct 279617 CCACCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 279676 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| || | |||||||| ||||| || Sbjct 279677 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 279736 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || || || || | ||||| | || || Sbjct 279737 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACC 279796 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || || || || ||||| |||||||||||| Sbjct 279797 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTTG 279847 >seq5338 Length=92157 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| || || || |||||||| || || ||| | || || Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | |||||||| ||||| || ||||| ||||| || || Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || |||| || || || |||||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 | ||| | || || | ||| ||||||||||||| Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTTGT 52374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505029313865960