Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4138 192 8e-44 seq9705 120 4e-22 >seq4138 Length=267950 Score = 192 bits (212), Expect = 8e-44 Identities = 348/502 (69%), Gaps = 8/502 (2%) Strand=Plus/Plus Query 39277 GTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGGTA 39333 |||| |||| || | ||| ||| ||| || | |||||| || |||| | || || Sbjct 162532 GTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCTCCATCCTCTGATA 162591 Query 39334 TTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAA 39393 || || || || ||||| || || || || || ||||| ||||| ||||||||||||| Sbjct 162592 CTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATGAG 162651 Query 39394 ATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATC 39453 ||||||||||| | | || | | || | || |||| || || | || || Sbjct 162652 GTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTGTC 162711 Query 39454 TGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGG 39513 | || ||||| ||||| ||||||| || ||||| || ||||| || || || Sbjct 162712 CGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACAGG 162771 Query 39514 TAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT-ACGGCCTCTGTTATTATCGATGTTA 39572 || |||||||| |||||||| | || | | || || || ||| | | || ||| | Sbjct 162772 CAGGGCCTCCGTGAGAAACTCCTGCTCTA-GCCTCACTGCA-CTGATGATTTCT-TGT-A 162827 Query 39573 CTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAAT 39632 || || ||| || | | || | ||||| | |||||| ||| |||| Sbjct 162828 CTCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGACACAGG 162887 Query 39633 GTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCAC 39692 ||| ||||||||||| ||||| | ||||| |||||||| || |||||||| || || | Sbjct 162888 GTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCC 162947 Query 39693 GCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTG 39752 | || |||||||| ||||| | |||||||| ||||| |||||||| |||||||| || | Sbjct 162948 GTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAG 163007 Query 39753 CAAATGCAACAAGTCTCTCTCC 39774 |||| || |||| || ||||| Sbjct 163008 CAAAGGCCACAACTCGTTCTCC 163029 >seq9705 Length=66704 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||||||||| |||||| ||| | || || || || || || | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | |||||| | | ||| || | ||||| |||| Sbjct 28044 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 27994 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || || || || ||||| || |||||||| || || || | || Sbjct 25039 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 24980 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 24979 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 24920 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 24919 TTTCTTATACCAT 24907 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 8322 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCTAAGA 8263 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | |||||| | || || ||| | || ||||| | ||||| | Sbjct 8262 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 8203 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || ||||| | || || ||||| || |||||||||| Sbjct 8202 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCATGG 8155 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 ||||||| ||| || | | || || ||||| || | || ||||| || ||||| ||| Sbjct 13139 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 13080 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 || || ||||||||||| |||||||||||||| || | || ||||| | ||||| Sbjct 13079 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATGGCAGCGTCAATATCTTCTTTGTGAATC 13020 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || | | || | ||||||||||||||| |||| ||| Sbjct 13019 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTC 12982 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 19046 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 18987 Query 69577 CA 69578 || Sbjct 18986 CA 18985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686407159089720