Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4138 136 3e-27 seq137 114 1e-20 seq19747 91.5 1e-13 seq24782 89.7 4e-13 seq3167 86.0 5e-12 seq221 84.2 2e-11 >seq4138 Length=267950 Score = 136 bits (150), Expect = 3e-27 Identities = 319/470 (68%), Gaps = 16/470 (3%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||||||| |||| || ||||| | ||| ||||| || ||||| || || || ||||| Sbjct 163029 GGAGAACGAGTTGTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCA 162970 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | |||||||| || |||||||||| | || ||||| || ||| | Sbjct 162969 TCAATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTT 162910 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGA 44302 || || | ||||| || |||| || | ||||| ||| || | | | | || | | Sbjct 162909 ATTAGCAGAGATGAGGGTTTACCCTGTGTCTTTGCCTGCCTGATGTTCAGGCACCTGGTA 162850 Query 44303 GACGATAAGCCTTCATGTAAGACAAT--TACA-GATATTGTTGTAGAGGCAGTAAAGATA 44359 || ||||| || || ||| |||| || || | || | |||| | | || Sbjct 162849 CAC---AAGCCGTCGG---AGCCAAGAGTACAAGAAATCATC--AGTG-CAGTGAGGCTA 162799 Query 44360 GAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTT 44418 || || || ||| | || || | ||||| ||| | || || ||||| || || | Sbjct 162798 GAGCAGGAGTTTCTCACGGAGGCCCTGCCTGTGAATCTCATCGGGATGAACTGCACCCT- 162740 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAA 44478 |||||| || || || |||| | | | || | | | |||| || || | | | | Sbjct 162739 GATGAAGCAGTACATCGAATTCGTGCCGGACAGGCTTATGCTGGAGCTAGGGTTC-AGCA 162681 Query 44479 ACACTAT-ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 | | | | | ||| |||| |||||||| | |||||||||||||| || ||||| || | Sbjct 162680 AGATTTTCAAAGTAGAAAATCCGTTTGACCTCATGGAAAATATTTCATTAGAAGGGAAGA 162621 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||||| ||||| || || || || || |||||| | |||| || ||| Sbjct 162620 CAAACTTCTTTGAGAAGCGAGTGGGCGAGTATCAGAGGATGGAGGTGATG 162571 >seq137 Length=869495 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| | || || || ||||| || |||| ||||| || ||| Sbjct 369351 TTACTGAGAGAAAATCCCCGCCGCTTCGTGGTTTTTCCCATCGAATACCATGATATCTGG 369292 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| ||||| |||| || || ||||| || || || || || | | || Sbjct 369291 CAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCTCTCCAAG 369232 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || | ||| ||| || | ||||| | || | ||||||||||||| || || Sbjct 369231 GATATTCAACACTGGGAAGCGCTGAAACCCGACGAGAGACATTTTATATCTCACGTCCTG 369172 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || ||||| ||||| || || ||||||||||||||| |||| ||| Sbjct 369171 GCTTTCTTTGCGGCGAGTGATGGCATAGTCAATGAAAATCTGGTGAGT 369124 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 368056 CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 367997 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 367996 ATACATTCTGAAATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 367949 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| |||||||| || |||||||||||||| | ||||| || |||||||| ||| Sbjct 364827 GTAGAAAATCCGTTTGACTTCATGGAAAATATTTCACTAGAAGGGAAGACAAACTTCTTT 364768 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || || || || |||||| | ||||| || ||| Sbjct 364767 GAGAAGCGAGTGGGCGAGTATCAGAGGATGGGGGTGATG 364729 >seq19747 Length=23491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||| |||| ||||| ||| | ||||| || || || ||||| || ||||| Sbjct 2647 ATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCTAATGGGGAGCTGTCT 2706 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 || || | || || || ||||| || ||||| || || || || || ||||| || || Sbjct 2707 TGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCAGC 2766 Query 41169 TATGCTCTGCTCACGTATATGATTGCACAC 41198 ||| | |||||||| || |||||||||||| Sbjct 2767 TATTCCCTGCTCACCTACATGATTGCACAC 2796 >seq24782 Length=13686 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| | | | ||||| || || || ||||| || |||| Sbjct 3093 TGATGGCACTGCCTCCTTGCCTTGCCCTCTGTCAATTCTATGTAGTGAATGGGGAGCTGT 3152 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| || || || || || || || || ||||| || | Sbjct 3153 CTTGCCAGCTCTACCAGAGGTCAGGAGATATTGGCCTGGGCGTGCCCTTCAACATTGCCA 3212 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| |||||||| || |||||||||||| Sbjct 3213 GCTATGCCCTGCTCACCTACATGATTGCACAC 3244 >seq3167 Length=233518 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| |||||||||||||| |||||||| || ||||| | Sbjct 51821 AAAATCCCTTTGATTTTATGGAAAACATTTCGTTGGAAGGGAAAACAAATTTCTTTGAGA 51880 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || ||| ||||| || || | | |||||| Sbjct 51881 AGCGAGTTTCTGAATACCAACGGTTCGCGGTCATG 51915 >seq221 Length=549257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------CT 19602 |||||||| || || | |||||| | || || ||||| ||||| ||||| || Sbjct 228491 TTGCACATCATCATCTTTGATGAAATCGATGCCATCTGCAAGCAGAGAGGGAGCATGGCT 228432 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | ||||| ||||||||||| ||||| || || ||||| || | || || ||| Sbjct 228431 GGTAGCACAGGAGTTCATGACACTGTGGTCAACCAGCTACTGTCCAAGATTGATGGCGTT 228372 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACT 19698 | |||||||| || || | |||||||| ||| || Sbjct 228371 GAGCAACTGAACAACATCCTCGTTATTGGTATGTCT 228336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397172999280115