Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3167 89.7 6e-13 seq4138 84.2 2e-11 seq137 82.4 8e-11 >seq3167 Length=233518 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| ||||||||| | ||||||||||| || || |||||| |||||||| Sbjct 45083 GCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCTGGCTG 45142 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||||||||| || || | |||||| ||||| ||||| Sbjct 45143 AAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCAAACGAACTGAT 45189 >seq4138 Length=267950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| || ||||| ||||||||||||||||| || | || |||||||| Sbjct 163014 GCCTTTGC-TGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCT 162956 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| || || || || ||||| ||||| | || ||||||||||| ||| | | || || Sbjct 162955 CAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATGA 162896 Query 60110 GGG 60112 ||| Sbjct 162895 GGG 162893 >seq137 Length=869495 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| || ||||| ||||||||||||||||| || | || |||||||| Sbjct 366705 GCCTTTGC-TGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCT 366647 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| || || || || ||||| ||||| | || ||||||||||| ||| | | || || Sbjct 366646 CAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATGA 366587 Query 60110 GG 60111 || Sbjct 366586 GG 366585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548124219195120