Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq124 104 3e-17 seq4138 87.8 2e-12 seq137 86.0 7e-12 >seq124 Length=1005534 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 364091 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 364032 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| ||||||||||||||||||||| Sbjct 364031 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 363972 Query 152149 ATCGT 152153 || || Sbjct 363971 ATAGT 363967 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 364091 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 364032 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 364031 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 363972 Query 117425 ATCGT 117429 || || Sbjct 363971 ATAGT 363967 >seq4138 Length=267950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 300/451 (67%), Gaps = 25/451 (6%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || || ||||| ||||| ||||| ||||||||||| || || || || ||||| Sbjct 162589 ATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCAT 162648 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTT-CTC--CCCAAACTGTGCCATGAG 74578 ||| || || || | | | | |||| ||| || ||| | || ||| || Sbjct 162649 GAGGTCAAACGGATTTTCTACTTTGAAAAT---CTTGCTGAACCCTAGCTCCAGCATAAG 162705 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCA-TCCATGCCGATGAGTT 74637 | |||| ||| |||| ||||||||| |||| ||| | ||| |||||||| | Sbjct 162706 CCTGTCCGGCACGAATTCGATGTACTGCTTCATCAGGGT-GCAGTTCATCCCGATGAGAT 162764 Query 74638 TGCAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCA-CCTCGCAAGCCCATTGGACAAT 74695 | ||| ||||| ||||| |||| |||||| ||| | |||| | || || | || Sbjct 162765 T-CACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTG---CACTG-ATGAT 162819 Query 74696 CTTGTGAATGTCTTTG----GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 | || | |||| | || || ||| | |||||| | | | | | || | Sbjct 162820 TTCTTGTAC-TCTTGGCTCCGACGG---CTTGTGTACCAGGTGCCTGAACATCAGGCA-G 162874 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| | | | || ||||||||||| || | || || ||||| | ||||||| Sbjct 162875 GCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCA 162934 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| ||||| || ||||| | ||| || || | || || ||| ||||||||| Sbjct 162935 GGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATC 162994 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTT 74901 ||||| ||| |||||||| |||| |||| Sbjct 162995 CCTTCTACAGCAGCAAAGGCCACAACTCGTT 163025 >seq137 Length=869495 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || ||||| | |||||||||||| ||||| || ||||| Sbjct 366587 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366646 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || || ||| ||||||||| ||||| ||| |||||||| Sbjct 366647 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 366706 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 366707 ACAACTCGTT 366716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546816374995400