Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1738 152 6e-32 seq2959 141 1e-28 seq248 141 1e-28 seq22505 134 2e-26 seq5999 134 2e-26 seq3071 131 2e-25 seq3025 127 2e-24 seq5338 125 8e-24 seq650 120 3e-22 seq17328 100 3e-16 seq3609 98.7 1e-15 seq4728 86.0 7e-12 seq38 86.0 7e-12 seq3301 84.2 2e-11 >seq1738 Length=291085 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || | |||||||| || ||||||||||| ||| | || Sbjct 19898 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 19957 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || |||||||| || || || || |||||| Sbjct 19958 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 20017 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || ||||||| || ||||| | | ||| ||| Sbjct 20018 CAGAGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGTCTACAAT 20077 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || |||||| | || || || | || || | ||||| Sbjct 20078 ATCCAAAAAGAGTCCACTTTGCACCTGGTGCTTCGCCTGCATGGTGG 20124 >seq2959 Length=310600 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || |||||||| || || || ||||| ||| | | Sbjct 279844 AATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 279785 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || ||||| || ||||| || || || ||||| Sbjct 279784 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCA 279725 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || |||||||| ||||| || || |||| || || || | || || || Sbjct 279724 GCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 279665 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||| | ||||| | ||||| Sbjct 279664 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGGGGTGG 279617 >seq248 Length=567972 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 1683 AATGCAAATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1624 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| |||||| || || | |||||| ||||| ||||| || ||| Sbjct 1623 TGACACCATCGAGAATGTGAAGGTGAAGATCCTGGACAAAGAGGGCATTCCACCCCCCCA 1564 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| || || |||||||| ||||| || || |||||| | || || | || || || Sbjct 1563 TCAGCAACTCATCTTTGCTGGCAAGCAGCTGGAAGATGATTGCACTCTCTCCGATTACAA 1504 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || || ||||| || || || ||| | ||||| | ||||| Sbjct 1503 TATCTAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGAGGTGG 1456 >seq22505 Length=6242 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || | |||||||| || ||||||||||| || | || Sbjct 3407 ATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCCAGT 3348 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| ||||| ||||| || || || |||||||| || || || || ||||| Sbjct 3347 GATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAT 3288 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||||| || ||||| | || || || Sbjct 3287 CAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTACAAC 3228 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||| | || || || | ||||| || || || Sbjct 3227 ATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGG 3181 >seq5999 Length=119422 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || | |||||||| || ||||||||||| || | || Sbjct 2836 ATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCCAGT 2895 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| ||||| ||||| || || || |||||||| || || || || ||||| Sbjct 2896 GATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAT 2955 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||||| || ||||| | || || || Sbjct 2956 CAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTACAAC 3015 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||| | || || || | ||||| || || || Sbjct 3016 ATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGG 3062 >seq3071 Length=285302 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| ||||| || || || || || |||||||| || | Sbjct 253380 ATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTAGAACCCTCA 253321 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 253320 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 253261 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| || || |||||||| ||||| || || |||| | ||| | | ||||| || Sbjct 253260 CAGAAGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCATACTTTGTCTGACTACAAC 253201 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 |||||||||| |||| |||||||| || ||| | ||||| ||| Sbjct 253200 ATCCAAAAGGAGTCCATCCTTCATCTGGTGTTGAGACTTCGTGGT 253156 >seq3025 Length=599017 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || | || || ||||| || || || ||||| ||| | | Sbjct 118136 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 118077 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || || ||||||||||| || || || || ||||| Sbjct 118076 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 118017 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || ||||||| || ||||| | ||||| || Sbjct 118016 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 117957 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||| |||| || | ||||| Sbjct 117956 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 117909 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495 ||||| || || || ||||| ||| | | || | ||| | || | ||||| || || Sbjct 115847 AAGACCATCACCCTGGAGGTCGAGCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATC 115788 Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 ||||||||||| || || || || ||||||||| | || || ||||| || ||||| || Sbjct 115787 CAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTG 115728 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| | ||||| || |||| || || ||||| || || || ||| Sbjct 115727 GAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTC 115668 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || | ||||| Sbjct 115667 CTGCGCCTCAGGGGTGG 115651 >seq5338 Length=92157 Score = 125 bits (138), Expect = 8e-24 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| | ||||| || ||| |||| || || || || ||||| | | | | Sbjct 52370 AATGCAAATCTTCATGAAGACCCTGACCAGCAAAACCATCACCCTGGAGGTGGCGCCGAG 52311 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || ||||| || ||||| || || || ||||| Sbjct 52310 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCA 52251 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || |||||||| ||||| || || |||| || || || | || || || Sbjct 52250 GCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 52191 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||| ||||| | ||||| Sbjct 52190 CATCCAGAAAGAGTCCACCCTGCACCTGGTC---CGTCTCAGGGGTGG 52146 >seq650 Length=610773 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||||| ||||| ||||||||||| || |||||| | || || Sbjct 359226 AAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGAT 359167 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||||| ||||| || || |||| ||||| | | ||||| | |||||||||| Sbjct 359166 CTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGCATCCAAAAGGA 359107 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| || ||| | |||| ||||| Sbjct 359106 GTCCACCCTTCATCTGGTGTTGAGACTTCATGGTGG 359071 >seq17328 Length=23406 Score = 100 bits (110), Expect = 3e-16 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTA---CTCTTGAGGTTGAGTCA 27462 ||||| |||||||| || || || || ||||| | || | |||||||||| || | Sbjct 1610 ATGCAGATCTTTGTGAAAACTCTGACAGGCAACATCATCATCACTCTTGAGGTCCAGCCC 1551 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| | ||||| || | ||||| || || || |||||||| | || | || || Sbjct 1550 AGTGACACCATTGAGAACATCAAGGCCAAGATCCAAGACAAGGAAGCCATCCTACCTCAC 1491 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | || || |||||||| ||||| || ||||||| || || || | |||| Sbjct 1490 CAGCAGAGACTGATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACTCTGTCCTACTAC 1431 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 || |||| || || |||| | | | || || | ||||| || |||| Sbjct 1430 AACATCCAGAAAGAGTCCATTTTGTACCTGGTGCTTCGTCTGCGTGGTG 1382 >seq3609 Length=131252 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | ||| |||||| ||||| || || || ||||| | Sbjct 106778 AATGCAAATCTTTGTGAAGACCCAGACCCACAAGACCATTACCCTAGAAGTGGAGTCCAG 106719 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 | | | ||||| ||| |||||| || |||||||| || ||||| || || | ||||| Sbjct 106718 TAACACCATTGAGAATGTGAAGGTCAAGATTCAGGATAAAGAGGGCATACCCCTTGACCA 106659 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | ||| ||||| || ||||| Sbjct 106658 ACAGAAGCAAATCTTTGCAGGCAAGCA 106632 >seq4728 Length=151395 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||||| ||||| || ||| ||| || |||||| | || || Sbjct 107794 AAATGTAAAGGCCAATATCCAGGATAAGGAAAGATTTCTTCCTGATCAGCAGAGGCTGAT 107853 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||||||||| ||||| || |||| |||| | ||||| || | ||||| Sbjct 107854 TTTTGCTGGTAAACAACTGGAAGATGGCTGTACTTTGTTTGACTACAACATTTAAAAG-- 107911 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 |||||| ||||||| || ||| | |||| Sbjct 107912 ATCCACCCTTCATCCTGTGTTGAGACTTC 107940 >seq38 Length=662743 Score = 86.0 bits (94), Expect = 7e-12 Identities = 162/234 (69%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG--- 27459 || || || || ||| ||||| |||| | |||||||| || ||||||| ||| Sbjct 643327 ATGATACAGATTTTTACAAAGACCCTTATGAGGAAGACTATCACCCTTGAGGCTGAACCC 643268 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 |||| || || || | |||| |||| | || || |||| || ||||||||||||| Sbjct 643267 TCAGATGCTA-CA--GAAAATGTGAAAACCAAGATCCAGGTTAAAAAGGGAATTCCTCCT 643211 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 || || | || || ||||||||||||| || || |||| || ||| | ||| Sbjct 643210 GATTGGCTAAGGCTTCTTCTTGCTGGTAAGCAGCTGGAAGATG-TCATACTTT----GAC 643156 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | ||||||| || || ||||||| || ||| | |||| |||||| Sbjct 643155 TACAACATTGAAAAGGAGTCTACCCTTCATCCTGTGTTGGGACTTCATGGTGGA 643102 >seq3301 Length=254354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 252349 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 252408 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || || || |||||||| || Sbjct 252409 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGG 252452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569893909443760