Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq19747 129 5e-25 seq24782 118 9e-22 seq11739 100 2e-16 seq1504 87.8 1e-12 seq27295 84.2 2e-11 seq13353 84.2 2e-11 >seq19747 Length=23491 Score = 129 bits (142), Expect = 5e-25 Identities = 126/160 (79%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007 |||| ||| || |||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 2801 GTGATGTGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAAGGGCACGCCC 2742 Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGCTCACGTA 30066 || ||||| || || ||||||||||||||||| || || ||||| || | ||| || || Sbjct 2741 AGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTAGCT-ACATA 2683 Query 30067 AAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 2682 GAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATTAGG 2643 >seq24782 Length=13686 Score = 118 bits (130), Expect = 9e-22 Identities = 128/167 (77%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 3256 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 3197 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGC 30059 || || || || || || || ||||||||||||||||| || || ||||| || || | Sbjct 3196 CACGCCCAGGCCAATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCAC 3137 Query 30060 TCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 | || || || ||||| | ||| |||| ||||| || ||||| ||| Sbjct 3136 T-ACATAGAATTGACAGAGGGCAAGGCAAGGAGGCAGTGCCATCAGG 3091 >seq11739 Length=28935 Score = 100 bits (110), Expect = 2e-16 Identities = 226/337 (67%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 30182 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30241 ||||||||||| | || || | | |||| |||| ||| || |||| |||||| Sbjct 18405 TTTTGCAGCTGGCCTACTCCTTGACTCAAGTAATCTGAATCCATATCTTTGTAGTCTGCT 18464 Query 30242 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TC 30300 | ||||| ||| | ||||| ||||| || || |||| || || || | | |||| Sbjct 18465 ACAAAATGTCTCTAATGGAAACCGTAAACTGGGCCCAACTCCCCTTCCTGTC-GTGCAGA 18523 Query 30301 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30360 ||| ||| | |||| | || | || ||| || ||||| |||||||| | || || || Sbjct 18524 GAATCCCATGCTGTCTAGAATATGTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTT 18583 Query 30361 CTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30420 | || ||||| | ||||||| || ||| |||||||||| ||||| || || Sbjct 18584 GGAGGCCAGTTCTTTAGCAGTTGTGGATCCCTTGATAAACCACAGCACCTCCTTCAAAAC 18643 Query 30421 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCT 30480 ||||||| || || | ||||| |||| || ||||| | | | ||| ||| Sbjct 18644 ACCCTTCCAGAACACTCGTTTGGTTATGAGCAGAGGAAATTCATCTCTCAGGTTGTATGG 18703 Query 30481 GGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCC 30517 ||||| || ||||| |||||| || |||||| Sbjct 18704 CGCCTGCATGCCTAACACCGACAAGGTGCCAGTGCCC 18740 >seq1504 Length=227043 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||| |||||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 174209 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 174268 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || | ||||| ||||| | |||||| || ||| Sbjct 174269 ATGGAGAACCAGGTTTTCCGGCCCATAATCACAAGGTTCTGTTTACCT 174316 >seq27295 Length=6846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/177 (72%), Gaps = 9/177 (5%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||| ||||||||||| || || || || |||||||| Sbjct 421 CATCTCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 480 Query 30283 TCCCTCTTCCCTGT-GCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 || | ||||| || | ||| ||| |||||| ||| |||| ||| || |||| Sbjct 481 CCC----TTCCTGTCGCGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGG 536 Query 30339 CGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 | |||||||| | || || || || || ||||| | |||||||| || |||| Sbjct 537 CATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCC-CTGA 592 >seq13353 Length=41068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/177 (72%), Gaps = 9/177 (5%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||| ||||||||||| || || || || |||||||| Sbjct 39507 CATCTCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 39448 Query 30283 TCCCTCTTCCCTGT-GCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 || | ||||| || | ||| ||| |||||| ||| |||| ||| || |||| Sbjct 39447 CCC----TTCCTGTCGCGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGG 39392 Query 30339 CGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 | |||||||| | || || || || || ||||| | |||||||| || |||| Sbjct 39391 CATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCC-CTGA 39336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406021094678916