Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq22505 120 3e-22 seq5999 120 3e-22 seq2959 87.8 2e-12 >seq22505 Length=6242 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || |||| |||||| | || |||||||| || | || Sbjct 3408 CATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCCAG 3349 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || ||| |||| || || |||||||| |||||||| ||||| || || Sbjct 3348 TGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 3289 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | |||| |||||||| || |||| || | |||| | ||||||||||| Sbjct 3288 TCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTACAA 3229 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || || || |||| | ||| |||| || ||||| Sbjct 3228 CATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGGCAT 3178 >seq5999 Length=119422 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| || || |||| |||||| | || |||||||| || | || Sbjct 2835 CATGCAGATATTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCTAGCCCAG 2894 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || ||| |||| || || |||||||| |||||||| ||||| || || Sbjct 2895 TGATACCATCAAGAATTTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 2954 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | |||| |||||||| || |||| || | |||| | ||||||||||| Sbjct 2955 TCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGATTACAA 3014 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || || || |||| | ||| |||| || ||||| Sbjct 3015 CATCCAGAAAGAGTCCACTTTGCACCTGGTGCTTCGTCTGCGTGGAGGCAT 3065 >seq2959 Length=310600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || || || || || || || Sbjct 279843 ATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 279784 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || ||||| ||||| || ||||| || Sbjct 279783 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAG 279724 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 279723 CAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 279664 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| ||| | || |||| | ||| | |||||||| Sbjct 279663 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGGGGTGGC 279616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434600784528960